View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3584_high_31 (Length: 240)
Name: NF3584_high_31
Description: NF3584
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3584_high_31 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 21 - 240
Target Start/End: Original strand, 6340452 - 6340671
Alignment:
| Q |
21 |
aaggatgagaaactgattgagccagtttctcaatcttttcaacaagctccggcgacagcttcttaactggtttcctttccttctcaggtcgaaaatcgaa |
120 |
Q |
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| T |
6340452 |
aaggatgagaaactgattgagccagtttctcaatcttttcaacaagctccggcgacagcttcttaactggtttcctttccttctcaggtcgaaaatcgaa |
6340551 |
T |
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| Q |
121 |
tcctagagcttcggatacttcttcggagctccacccagcttttcgaagtgaatccgaaaaccgatccgcttttaataacaaagcatccaacaacgcttga |
220 |
Q |
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| T |
6340552 |
tcctagagcttcggatacttcttcggagctccacccagcttttcgaagtgaatccgaaaaccgatccgcttttaataacaaagcatccaacaacgcttga |
6340651 |
T |
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| Q |
221 |
ttatccaacatcaccatttc |
240 |
Q |
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| T |
6340652 |
ttatccaacatcaccatttc |
6340671 |
T |
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