View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3584_high_33 (Length: 239)
Name: NF3584_high_33
Description: NF3584
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3584_high_33 |
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Alignment Details
Target: chr5 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 2348584 - 2348363
Alignment:
| Q |
1 |
ggttcttccaaactcacttattcaaagaatgatcaacattttgcagatatgttgttgaagaaattgatgaatggtaattcagataaaactaatcacaaaa |
100 |
Q |
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| T |
2348584 |
ggttcttccaaactcacttattcaaagaatgatcaacattttgcagatatgttgttgaagaaattgatgaatggtaattcagataaaactaatcacaaaa |
2348485 |
T |
|
| Q |
101 |
acagtaatgataaagtattgtggccaattggtgtgttgttaggatccaaagattaccaagtgaggagaagattgggaagggggaaggaatttaaggaaat |
200 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2348484 |
acagtaatgataaagtattgtggccaattggtgttttgttaggatccaaagattaccaagtgaggagaagattgggaagggggaaggaatttaaggaaat |
2348385 |
T |
|
| Q |
201 |
tcaatggttaggacaaagtttt |
222 |
Q |
| |
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|||||||||||||||||||||| |
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| T |
2348384 |
tcaatggttaggacaaagtttt |
2348363 |
T |
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