View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3584_high_38 (Length: 225)
Name: NF3584_high_38
Description: NF3584
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3584_high_38 |
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Alignment Details
Target: chr8 (Bit Score: 198; Significance: 1e-108; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 1 - 218
Target Start/End: Original strand, 28294693 - 28294910
Alignment:
| Q |
1 |
cttgatcctcttgatattttcttcacagcaacttgtaaatctaaatcagcaaagtaacctttaaaaactgctccaaaaccaccttgacccaactttctat |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||| |
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| T |
28294693 |
cttgatcctcttgatattttcttcacagcaacttgtaaatctaaatcagcaaagtaacctttataaacagctccaaaaccaccttgacccaactttctat |
28294792 |
T |
|
| Q |
101 |
ccttagaaaagttattggttgccaaatcaagttctttgtaggtgaaccttcttggccctgctcctctttcaaggtcatcattcattgaagtcaaatgcat |
200 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
28294793 |
ccttagagaagttattggttgccaaatcaagttctttgtaggtgaaccttcttggccctgctcctctttcaagatcatcattcattgaagtcaaatgcat |
28294892 |
T |
|
| Q |
201 |
agcctcttccctttgctt |
218 |
Q |
| |
|
|||||||||| ||||||| |
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| T |
28294893 |
agcctcttccttttgctt |
28294910 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 1 - 218
Target Start/End: Original strand, 28264878 - 28265095
Alignment:
| Q |
1 |
cttgatcctcttgatattttcttcacagcaacttgtaaatctaaatcagcaaagtaacctttaaaaactgctccaaaaccaccttgacccaactttctat |
100 |
Q |
| |
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||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28264878 |
cttgaccctctggatattttcttcacagcaacttgtaaatctaaatcagcaaagtaacctttaaaaactgctccaaaaccaccttgacccaactttctat |
28264977 |
T |
|
| Q |
101 |
ccttagaaaagttattggttgccaaatcaagttctttgtaggtgaaccttcttggccctgctcctctttcaaggtcatcattcattgaagtcaaatgcat |
200 |
Q |
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|
||||||||||||||||||||||||| ||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28264978 |
ccttagaaaagttattggttgccaactcaagttctttgtaggtaaacctccttggccctgctcctctttcaaggtcatcattcattgaagtcaaatgcat |
28265077 |
T |
|
| Q |
201 |
agcctcttccctttgctt |
218 |
Q |
| |
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|||||||||| ||||||| |
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| T |
28265078 |
agcctcttccttttgctt |
28265095 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 1 - 218
Target Start/End: Original strand, 28304895 - 28305112
Alignment:
| Q |
1 |
cttgatcctcttgatattttcttcacagcaacttgtaaatctaaatcagcaaagtaacctttaaaaactgctccaaaaccaccttgacccaactttctat |
100 |
Q |
| |
|
||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28304895 |
cttgaccctctggatattttcttcacagcaacttgtaaatctaaatcagcaaagtaacctttaaaaactgctccaaaaccaccttgacccaactttctat |
28304994 |
T |
|
| Q |
101 |
ccttagaaaagttattggttgccaaatcaagttctttgtaggtgaaccttcttggccctgctcctctttcaaggtcatcattcattgaagtcaaatgcat |
200 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28304995 |
ccttagaaaagttattggttgccaactcaagttctttgtaggtaaacctccttggccctgctcctctttcaaggtcatcattcattgaagtcaaatgcat |
28305094 |
T |
|
| Q |
201 |
agcctcttccctttgctt |
218 |
Q |
| |
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|||||||||| ||||||| |
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| T |
28305095 |
agcctcttccttttgctt |
28305112 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 13 - 210
Target Start/End: Complemental strand, 28278981 - 28278784
Alignment:
| Q |
13 |
gatattttcttcacagcaacttgtaaatctaaatcagcaaagtaacctttaaaaactgctccaaaaccaccttgacccaactttctatccttagaaaagt |
112 |
Q |
| |
|
|||||||||||||||||||| |||||||| |||| ||||| ||||||| | || |||||||| |||||||||||||||||||||||| |||| |||| |
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| T |
28278981 |
gatattttcttcacagcaaccggtaaatctggatcaaaaaagttacctttatatacagctccaaacccaccttgacccaactttctatccctagagaagt |
28278882 |
T |
|
| Q |
113 |
tattggttgccaaatcaagttctttgtaggtgaaccttcttggccctgctcctctttcaaggtcatcattcattgaagtcaaatgcatagcctcttcc |
210 |
Q |
| |
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|||| || || |||| ||||||||||||||||||||| ||||||||||||||||||||||| || |||||||||||||| ||| ||||||||||||| |
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| T |
28278881 |
tattagtggctaaattaagttctttgtaggtgaacctccttggccctgctcctctttcaagatcgtcattcattgaagttaaactcatagcctcttcc |
28278784 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 102; E-Value: 8e-51
Query Start/End: Original strand, 1 - 210
Target Start/End: Complemental strand, 28288858 - 28288649
Alignment:
| Q |
1 |
cttgatcctcttgatattttcttcacagcaacttgtaaatctaaatcagcaaagtaacctttaaaaactgctccaaaaccaccttgacccaactttctat |
100 |
Q |
| |
|
||||| |||||||||||||||||||||||||| ||||||| ||| ||||||||||||| |||| |||||||||||||||||||| || ||||||| |
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| T |
28288858 |
cttgaccctcttgatattttcttcacagcaacggctaaatcttgatcgaaaaagtaacctttataaacagctccaaaaccaccttgacctaattttctat |
28288759 |
T |
|
| Q |
101 |
ccttagaaaagttattggttgccaaatcaagttctttgtaggtgaaccttcttggccctgctcctctttcaaggtcatcattcattgaagtcaaatgcat |
200 |
Q |
| |
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| | | ||| |||||||| |||||||||||||||| |||||| ||||| ||||||||||||||||||| ||||||||||||||||| | |||||||| |
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| T |
28288758 |
cgtcggtaaatttattggtagccaaatcaagttcttggtaggtaaacctccttggccctgctcctctttgaaggtcatcattcattgttcttaaatgcat |
28288659 |
T |
|
| Q |
201 |
agcctcttcc |
210 |
Q |
| |
|
|||||||||| |
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|
| T |
28288658 |
agcctcttcc |
28288649 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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