View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3584_high_6 (Length: 318)
Name: NF3584_high_6
Description: NF3584
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3584_high_6 |
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Alignment Details
Target: chr8 (Bit Score: 276; Significance: 1e-154; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 9 - 300
Target Start/End: Complemental strand, 28264901 - 28264610
Alignment:
| Q |
9 |
gaagaaaatatcaagaggatcaagacaaggaaagaaagagtatgtaactgaagttaaagtcattagtcaactgagacatagaaatcttgtgaagcttctg |
108 |
Q |
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|||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
28264901 |
gaagaaaatatccagagggtcaagacaaggaaagaaagagtatgtaactgaagttaaagttattagtcaactgagacatagaaatcttgtgaagcttctg |
28264802 |
T |
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| Q |
109 |
ggatggtgccatgacaaaggtgagtttctacttgtttatgagttcatgccaaatggtagtcttgattctcatttatttggtaaaaggacacctcttcctt |
208 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28264801 |
ggatggtgccatgataaaggtgagtttctacttgtttatgagttcatgccaaatggtagtcttgattctcatttatttggtaaaaggacacctcttcctt |
28264702 |
T |
|
| Q |
209 |
ggattgtaaggcacaaaatagcacttggcttggcctctggtgtgctttatctacatgaagaatgggagaggtgtgtggtacatagggatatt |
300 |
Q |
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| T |
28264701 |
ggattgtaaggcacaaaatagcacttggcttggcctctggtgtgctttatctacatgaagaatgggagaggtgtgtggtacatagggatatt |
28264610 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 9 - 300
Target Start/End: Complemental strand, 28294716 - 28294425
Alignment:
| Q |
9 |
gaagaaaatatcaagaggatcaagacaaggaaagaaagagtatgtaactgaagttaaagtcattagtcaactgagacatagaaatcttgtgaagcttctg |
108 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| || |
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| T |
28294716 |
gaagaaaatatcaagaggatcaagacaaggaaagaaagagtatgtaactgaagttaaagtcattagtcaactgagacataggaatcttgtgaagcttttg |
28294617 |
T |
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| Q |
109 |
ggatggtgccatgacaaaggtgagtttctacttgtttatgagttcatgccaaatggtagtcttgattctcatttatttggtaaaaggacacctcttcctt |
208 |
Q |
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| T |
28294616 |
ggttggtgccatgacaaaggtgagtttctacttgtttatgagttcatgccaaatggtagtcttgattctcatttatttggtaaaagaacacctctttctt |
28294517 |
T |
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| Q |
209 |
ggattgtaaggcacaaaatagcacttggcttggcctctggtgtgctttatctacatgaagaatgggagaggtgtgtggtacatagggatatt |
300 |
Q |
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|| |||||||||||||||||| ||||| ||||| |||||| ||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
28294516 |
ggggtgtaaggcacaaaatagctcttggattggcttctggtttgctttatctacatgaagaatgggagaggtgtgtggttcatagggatatt |
28294425 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 9 - 300
Target Start/End: Complemental strand, 28304918 - 28304627
Alignment:
| Q |
9 |
gaagaaaatatcaagaggatcaagacaaggaaagaaagagtatgtaactgaagttaaagtcattagtcaactgagacatagaaatcttgtgaagcttctg |
108 |
Q |
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|||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||| | |
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| T |
28304918 |
gaagaaaatatccagagggtcaagacaaggaaagaaagagtatgtaactgaagttaaagttattagtcaactgagacataggaatcttgtgaagctctta |
28304819 |
T |
|
| Q |
109 |
ggatggtgccatgacaaaggtgagtttctacttgtttatgagttcatgccaaatggtagtcttgattctcatttatttggtaaaaggacacctcttcctt |
208 |
Q |
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|| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||| |
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| T |
28304818 |
ggctggtgccatgacaaaggtgagtttctacttatttatgagttcatgccaaatggtagtcttgattctcatttatttggtaaaagaacacctctttctt |
28304719 |
T |
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| Q |
209 |
ggattgtaaggcacaaaatagcacttggcttggcctctggtgtgctttatctacatgaagaatgggagaggtgtgtggtacatagggatatt |
300 |
Q |
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|| |||||||||||||||| | ||||| |||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28304718 |
ggggtgtaaggcacaaaataactcttggattggcctctggtttgctgtatctacatgaagaatgggagaggtgtgtggtacatagggatatt |
28304627 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 9 - 299
Target Start/End: Original strand, 28288835 - 28289125
Alignment:
| Q |
9 |
gaagaaaatatcaagaggatcaagacaaggaaagaaagagtatgtaactgaagttaaagtcattagtcaactgagacatagaaatcttgtgaagcttctg |
108 |
Q |
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|||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||| ||||| || ||||||||||| |||||||||||||| | |
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| T |
28288835 |
gaagaaaatatcaagagggtcaagacaagggaagaaagagtatgtaactgaagttaaagttattagccagctgagacataggaatcttgtgaagctctta |
28288934 |
T |
|
| Q |
109 |
ggatggtgccatgacaaaggtgagtttctacttgtttatgagttcatgccaaatggtagtcttgattctcatttatttggtaaaaggacacctcttcctt |
208 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||| ||| |
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| T |
28288935 |
ggatggtgccatgacaaaggtgagtttctacttgtttatgagttcatgccaaatggtagtcttgattctcatttattcggaaaaaggacacctctttctt |
28289034 |
T |
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| Q |
209 |
ggattgtaaggcacaaaatagcacttggcttggcctctggtgtgctttatctacatgaagaatgggagaggtgtgtggtacatagggatat |
299 |
Q |
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||| |||||| || |||||||| ||||| ||||| | ||| || ||||||||||||||||||||||||||||||||||| ||||| ||||| |
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| T |
28289035 |
ggagtgtaagacataaaatagctcttggattggcttttggggtactttatctacatgaagaatgggagaggtgtgtggttcatagagatat |
28289125 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 9 - 300
Target Start/End: Original strand, 28278970 - 28279261
Alignment:
| Q |
9 |
gaagaaaatatcaagaggatcaagacaaggaaagaaagagtatgtaactgaagttaaagtcattagtcaactgagacatagaaatcttgtgaagcttctg |
108 |
Q |
| |
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|||||||||||| | ||||| |||||||| |||||||||||||| |||||||||||||||||||| | | ||||||| | |||||||||||| | | |
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| T |
28278970 |
gaagaaaatatcgaagggatctagacaagggaagaaagagtatgttactgaagttaaagtcattagcccattgagacaccggaatcttgtgaagttgtta |
28279069 |
T |
|
| Q |
109 |
ggatggtgccatgacaaaggtgagtttctacttgtttatgagttcatgccaaatggtagtcttgattctcatttatttggtaaaaggacacctcttcctt |
208 |
Q |
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|| ||||||||||| |||||||||||||| |||||||||||||| ||||| || ||||| || ||||||||||||||||||||||| | ||||||| ||| |
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| T |
28279070 |
ggttggtgccatgaaaaaggtgagtttcttcttgtttatgagtttatgcctaacggtagcctggattctcatttatttggtaaaagaatacctctttctt |
28279169 |
T |
|
| Q |
209 |
ggattgtaaggcacaaaatagcacttggcttggcctctggtgtgctttatctacatgaagaatgggagaggtgtgtggtacatagggatatt |
300 |
Q |
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||| | ||||||||||||||||||||| ||||| ||||||||||||||| |||||||||||||||| | ||||||||||||||||||||| |
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| T |
28279170 |
ggagtctaaggcacaaaatagcacttgaattggcatctggtgtgctttatttacatgaagaatgggaaaaatgtgtggtacatagggatatt |
28279261 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 112 - 192
Target Start/End: Complemental strand, 28342110 - 28342030
Alignment:
| Q |
112 |
tggtgccatgacaaaggtgagtttctacttgtttatgagttcatgccaaatggtagtcttgattctcatttatttggtaaa |
192 |
Q |
| |
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||||| ||||| ||| ||||| || ||||||||||||| | |||||| ||||| |||||||||| |||| ||||||||||| |
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| T |
28342110 |
tggtgtcatgaaaaaagtgagcttttacttgtttatgaatacatgcctaatggaagtcttgattatcatctatttggtaaa |
28342030 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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