View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3584_high_9 (Length: 299)
Name: NF3584_high_9
Description: NF3584
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3584_high_9 |
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Alignment Details
Target: chr6 (Bit Score: 263; Significance: 1e-147; HSPs: 7)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 263; E-Value: 1e-147
Query Start/End: Original strand, 19 - 289
Target Start/End: Original strand, 2363320 - 2363590
Alignment:
| Q |
19 |
tggaggtggtagaaggatttgtcccggaatatcattagggcttcaaatgctgcatttaactttggctagttttttgcattcctttgaaatcttaaatcca |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2363320 |
tggaggtggtagaaggatttgtcccggaatatcattagggcttcaaatgctgcatttaactttggctagttttttgcattcctttgaaatcttaaatcca |
2363419 |
T |
|
| Q |
119 |
tcaagtgaacctattgatatgaatgaaacttttggattaagcaacacgaaaacaactcctcttgagattcttataaagccacgtttgtcttcgaattgtt |
218 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
2363420 |
tcaagtgaacctattgatatgaatgaaacttttggattaagcaacaccaaaacaactcctcttgagattcttataaagccacgtttgtcttcgaattgtt |
2363519 |
T |
|
| Q |
219 |
atgaaattatgtgactttgtgttagcattatatttataatattttgtgttttcaaactttgtaatcctttg |
289 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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|
| T |
2363520 |
atgaaattatgtgactttgtgttagcattatatttataatattttgtgttttgaaactttgtaatcctttg |
2363590 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 19 - 232
Target Start/End: Original strand, 2369066 - 2369279
Alignment:
| Q |
19 |
tggaggtggtagaaggatttgtcccggaatatcattagggcttcaaatgctgcatttaactttggctagttttttgcattcctttgaaatcttaaatcca |
118 |
Q |
| |
|
||||||||||||||||||||| || ||||| ||||| || ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
2369066 |
tggaggtggtagaaggatttgccctggaatgtcatttggccttcaaatggtgcatttaactttggctagttttttgcattcctttgaaatcttaaatcca |
2369165 |
T |
|
| Q |
119 |
tcaagtgaacctattgatatgaatgaaacttttggattaagcaacacgaaaacaactcctcttgagattcttataaagccacgtttgtcttcgaattgtt |
218 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||| |||||| |||||||||||||||||||||||||| ||||||||||||||||||||||| | |
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|
| T |
2369166 |
tcaagtgaacctattgatatgactgaaacttttggattaaccaacaccaaaacaactcctcttgagattcttattaagccacgtttgtcttcgaattgct |
2369265 |
T |
|
| Q |
219 |
atgaaattatgtga |
232 |
Q |
| |
|
|||||||||||||| |
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|
| T |
2369266 |
atgaaattatgtga |
2369279 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 19 - 238
Target Start/End: Original strand, 2307555 - 2307774
Alignment:
| Q |
19 |
tggaggtggtagaaggatttgtcccggaatatcattagggcttcaaatgctgcatttaactttggctagttttttgcattcctttgaaatcttaaatcca |
118 |
Q |
| |
|
|||| ||||||||||||| || || ||||||||| | || ||||||||||||||||| | | | ||||||||||||||||||||||| |||||||||||| |
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|
| T |
2307555 |
tggaagtggtagaaggatatgccctggaatatcacttggacttcaaatgctgcatttcattctagctagttttttgcattcctttgatatcttaaatcca |
2307654 |
T |
|
| Q |
119 |
tcaagtgaacctattgatatgaatgaaacttttggattaagcaacacgaaaacaactcctcttgagattcttataaagccacgtttgtcttcgaattgtt |
218 |
Q |
| |
|
| ||||| | ||||||||| |||| | |||||||||| ||||| ||| | ||||||||| ||||||| || || |||| ||||||| ||||||| |
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|
| T |
2307655 |
acccctgaacttgttgatatgagtgaatcctttggattaacaaacactaaagctactcctcttaagattctcattaaaccacatttgtctatcaattgtt |
2307754 |
T |
|
| Q |
219 |
atgaaattatgtgactttgt |
238 |
Q |
| |
|
||||||| |||||| ||||| |
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|
| T |
2307755 |
atgaaatcatgtgattttgt |
2307774 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 19 - 232
Target Start/End: Original strand, 2340236 - 2340449
Alignment:
| Q |
19 |
tggaggtggtagaaggatttgtcccggaatatcattagggcttcaaatgctgcatttaactttggctagttttttgcattcctttgaaatcttaaatcca |
118 |
Q |
| |
|
|||| |||||||||||| ||||| |||||||| || || ||||||||||||||||| || | ||||||||||||||||||||||| |||||||||||| |
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|
| T |
2340236 |
tggaagtggtagaaggaaatgtcctggaatatcgtttggacttcaaatgctgcatttcaccctagctagttttttgcattcctttgatatcttaaatcca |
2340335 |
T |
|
| Q |
119 |
tcaagtgaacctattgatatgaatgaaacttttggattaagcaacacgaaaacaactcctcttgagattcttataaagccacgtttgtcttcgaattgtt |
218 |
Q |
| |
|
|| ||| || ||||||||| |||| | ||||||| || || | ||| | ||||| ||||||||||| || || |||||||||||| ||||||| |
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|
| T |
2340336 |
acacctgatgctgttgatatgagtgaagcctttggatcaacgaattccaaagctactccacttgagattctcattaaaccacgtttgtctcacaattgtt |
2340435 |
T |
|
| Q |
219 |
atgaaattatgtga |
232 |
Q |
| |
|
|||| |||||||| |
|
|
| T |
2340436 |
atgagtttatgtga |
2340449 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 19 - 140
Target Start/End: Original strand, 2358005 - 2358126
Alignment:
| Q |
19 |
tggaggtggtagaaggatttgtcccggaatatcattagggcttcaaatgctgcatttaactttggctagttttttgcattcctttgaaatcttaaatcca |
118 |
Q |
| |
|
|||| ||||||||||||||||||| | |||||| || || || ||||| ||||||||| |||||||| |||||||||||| ||||||||||| || || |
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|
| T |
2358005 |
tggaagtggtagaaggatttgtcctgaaatatcttttggactagaaatgatgcatttaattttggctaattttttgcattcatttgaaatcttgtattca |
2358104 |
T |
|
| Q |
119 |
tcaagtgaacctattgatatga |
140 |
Q |
| |
|
|| ||||| ||||||||||||| |
|
|
| T |
2358105 |
tcgagtgagcctattgatatga |
2358126 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 19 - 146
Target Start/End: Complemental strand, 2261287 - 2261160
Alignment:
| Q |
19 |
tggaggtggtagaaggatttgtcccggaatatcattagggcttcaaatgctgcatttaactttggctagttttttgcattcctttgaaatcttaaatcca |
118 |
Q |
| |
|
|||| ||||||||||||| ||||| |||||||| || || ||||| ||| | |||||||||||||||| |||||| || ||||||||||| ||||| | |
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|
| T |
2261287 |
tggaagtggtagaaggatatgtccaggaatatcttttggtcttcatatgattcatttaactttggctaattttttacactcctttgaaattgtaaatgga |
2261188 |
T |
|
| Q |
119 |
tcaagtgaacctattgatatgaatgaaa |
146 |
Q |
| |
|
|| ||||||||| ||||||||| ||||| |
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|
| T |
2261187 |
tctagtgaacctgttgatatgactgaaa |
2261160 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 19 - 118
Target Start/End: Original strand, 2351689 - 2351788
Alignment:
| Q |
19 |
tggaggtggtagaaggatttgtcccggaatatcattagggcttcaaatgctgcatttaactttggctagttttttgcattcctttgaaatcttaaatcca |
118 |
Q |
| |
|
|||| |||||||||||| ||||| | |||||| || || |||||||| ||||||| ||| | || |||||||||||||||||||| |||||||||||| |
|
|
| T |
2351689 |
tggaagtggtagaaggaagtgtcctgcaatatcttttggacttcaaattgtgcatttcactctagcaagttttttgcattcctttgatatcttaaatcca |
2351788 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 89; Significance: 6e-43; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 19 - 223
Target Start/End: Original strand, 4306018 - 4306222
Alignment:
| Q |
19 |
tggaggtggtagaaggatttgtcccggaatatcattagggcttcaaatgctgcatttaactttggctagttttttgcattcctttgaaatcttaaatcca |
118 |
Q |
| |
|
|||| ||||||||||||||||||| |||||||| | || ||||||||| |||||||| ||||||||||||||||||||||||||||||||| ||| || |
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|
| T |
4306018 |
tggaagtggtagaaggatttgtccaggaatatcttatggccttcaaatggtgcatttatctttggctagttttttgcattcctttgaaatctcaaaggca |
4306117 |
T |
|
| Q |
119 |
tcaagtgaacctattgatatgaatgaaacttttggattaagcaacacgaaaacaactcctcttgagattcttataaagccacgtttgtcttcgaattgtt |
218 |
Q |
| |
|
||| ||||||||||||||||| |||| |||||||| | | |||| || ||||||| || ||||||||||| ||||| |||||| |||| ||||||| |
|
|
| T |
4306118 |
tcagctgaacctattgatatgactgaagcttttggaatcaccaaccacaaggcaactccactagagattcttattaagcctcgtttgccttctaattgtt |
4306217 |
T |
|
| Q |
219 |
atgaa |
223 |
Q |
| |
|
||||| |
|
|
| T |
4306218 |
atgaa |
4306222 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 19 - 222
Target Start/End: Complemental strand, 5804248 - 5804045
Alignment:
| Q |
19 |
tggaggtggtagaaggatttgtcccggaatatcattagggcttcaaatgctgcatttaactttggctagttttttgcattcctttgaaatcttaaatcca |
118 |
Q |
| |
|
|||| |||||||||||| ||||| ||||||| || || ||||||||| ||||||| ||| | ||||||||||||||||||||||| |||||||||||| |
|
|
| T |
5804248 |
tggaagtggtagaaggaaatgtcctggaatatgttttggacttcaaatggtgcattttactctagctagttttttgcattcctttgatatcttaaatcca |
5804149 |
T |
|
| Q |
119 |
tcaagtgaacctattgatatgaatgaaacttttggattaagcaacacgaaaacaactcctcttgagattcttataaagccacgtttgtcttcgaattgtt |
218 |
Q |
| |
|
|| ||||| ||||||||||| |||| |||||||||| || | ||| | ||||| ||||| ||||| || || |||||||||||| ||||||| |
|
|
| T |
5804148 |
acacctgaacttattgatatgactgaagaatttggattaacaaatagcaaagctactccacttgaaattctcattaaaccacgtttgtctctcaattgtt |
5804049 |
T |
|
| Q |
219 |
atga |
222 |
Q |
| |
|
|||| |
|
|
| T |
5804048 |
atga |
5804045 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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