View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3584_low_17 (Length: 267)

Name: NF3584_low_17
Description: NF3584
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3584_low_17
NF3584_low_17
[»] chr3 (24 HSPs)
chr3 (26-151)||(54442886-54443011)
chr3 (188-222)||(54617476-54617510)
chr3 (189-220)||(6224051-6224082)
chr3 (189-220)||(26704053-26704084)
chr3 (189-220)||(39132191-39132222)
chr3 (189-220)||(40629829-40629860)
chr3 (182-220)||(17551845-17551883)
chr3 (238-267)||(160543-160572)
chr3 (238-267)||(3135773-3135802)
chr3 (189-222)||(38098495-38098528)
chr3 (238-267)||(42880113-42880142)
chr3 (238-267)||(43081601-43081630)
chr3 (238-267)||(43862532-43862561)
chr3 (238-267)||(43974010-43974039)
chr3 (187-220)||(47979178-47979211)
chr3 (238-267)||(51335796-51335825)
chr3 (239-267)||(19114081-19114109)
chr3 (235-267)||(26324662-26324694)
chr3 (188-220)||(33898847-33898879)
chr3 (235-267)||(39996657-39996689)
chr3 (235-267)||(42236074-42236106)
chr3 (235-267)||(43140528-43140560)
chr3 (239-267)||(48381003-48381031)
chr3 (189-225)||(54279827-54279863)
[»] chr2 (19 HSPs)
chr2 (26-151)||(13747259-13747384)
chr2 (182-220)||(29386702-29386740)
chr2 (189-220)||(18587499-18587530)
chr2 (189-220)||(32400904-32400935)
chr2 (189-220)||(36741562-36741593)
chr2 (189-220)||(38203842-38203873)
chr2 (189-220)||(39120434-39120465)
chr2 (238-267)||(12611686-12611715)
chr2 (189-226)||(40768377-40768414)
chr2 (239-267)||(1722191-1722219)
chr2 (239-267)||(4831593-4831621)
chr2 (239-267)||(6376743-6376771)
chr2 (189-225)||(10377815-10377851)
chr2 (239-267)||(10590748-10590776)
chr2 (235-267)||(23388813-23388845)
chr2 (239-267)||(29134060-29134088)
chr2 (189-217)||(34423177-34423205)
chr2 (238-266)||(44043398-44043426)
chr2 (235-267)||(44537882-44537914)
[»] chr4 (27 HSPs)
chr4 (152-229)||(45024152-45024229)
chr4 (189-222)||(44370650-44370683)
chr4 (180-220)||(4415590-4415630)
chr4 (235-267)||(45024580-45024612)
chr4 (189-220)||(874868-874899)
chr4 (189-220)||(1620568-1620599)
chr4 (189-220)||(4116154-4116185)
chr4 (189-220)||(6213212-6213243)
chr4 (189-220)||(14075502-14075533)
chr4 (189-220)||(16071284-16071315)
chr4 (189-220)||(16071745-16071776)
chr4 (189-220)||(19054555-19054586)
chr4 (189-220)||(42511816-42511847)
chr4 (189-220)||(45756433-45756464)
chr4 (190-220)||(17318888-17318918)
chr4 (188-218)||(39150728-39150758)
chr4 (238-267)||(26918240-26918269)
chr4 (238-267)||(29097542-29097571)
chr4 (189-226)||(43594549-43594586)
chr4 (238-267)||(55244237-55244266)
chr4 (239-267)||(1309764-1309792)
chr4 (235-267)||(30031948-30031980)
chr4 (235-267)||(37255560-37255592)
chr4 (234-266)||(38104074-38104106)
chr4 (235-267)||(39911066-39911098)
chr4 (235-267)||(40186541-40186573)
chr4 (239-267)||(43067234-43067262)
[»] chr8 (24 HSPs)
chr8 (189-222)||(8841861-8841894)
chr8 (235-267)||(10673414-10673446)
chr8 (180-220)||(10983601-10983641)
chr8 (189-220)||(2659912-2659943)
chr8 (189-220)||(7016627-7016658)
chr8 (189-232)||(14136506-14136549)
chr8 (189-220)||(18252594-18252625)
chr8 (189-220)||(26534204-26534235)
chr8 (189-220)||(28525837-28525868)
chr8 (189-220)||(35160708-35160739)
chr8 (189-220)||(40666045-40666076)
chr8 (182-220)||(27343386-27343424)
chr8 (189-222)||(20052073-20052106)
chr8 (238-267)||(22199630-22199659)
chr8 (189-218)||(34010460-34010489)
chr8 (238-267)||(35213382-35213411)
chr8 (239-267)||(13349284-13349312)
chr8 (189-232)||(32721873-32721917)
chr8 (235-267)||(38389894-38389926)
chr8 (235-267)||(40668431-40668463)
chr8 (235-267)||(42148443-42148475)
chr8 (235-267)||(42641382-42641414)
chr8 (235-267)||(42787655-42787687)
chr8 (235-267)||(45509632-45509664)
[»] chr7 (20 HSPs)
chr7 (189-226)||(1976002-1976039)
chr7 (235-267)||(1694396-1694428)
chr7 (235-267)||(32457198-32457230)
chr7 (235-267)||(46613353-46613385)
chr7 (189-220)||(4789205-4789236)
chr7 (189-220)||(19228401-19228432)
chr7 (182-220)||(17177702-17177740)
chr7 (189-227)||(34327023-34327061)
chr7 (234-267)||(23847823-23847856)
chr7 (238-267)||(43185039-43185068)
chr7 (238-267)||(43542680-43542709)
chr7 (239-267)||(584862-584890)
chr7 (235-267)||(1023706-1023738)
chr7 (235-267)||(1730365-1730397)
chr7 (239-267)||(15076575-15076603)
chr7 (235-267)||(22867312-22867344)
chr7 (239-267)||(30952803-30952831)
chr7 (239-267)||(40366691-40366719)
chr7 (239-267)||(41014017-41014045)
chr7 (239-267)||(44480807-44480835)
[»] chr1 (22 HSPs)
chr1 (189-222)||(3793034-3793067)
chr1 (189-222)||(19893802-19893835)
chr1 (235-267)||(1053298-1053330)
chr1 (235-267)||(4051458-4051490)
chr1 (189-220)||(9780256-9780287)
chr1 (189-220)||(49580072-49580103)
chr1 (189-220)||(52826669-52826700)
chr1 (189-219)||(21249013-21249043)
chr1 (189-219)||(31683202-31683232)
chr1 (238-267)||(20754319-20754348)
chr1 (238-267)||(24973034-24973063)
chr1 (238-267)||(26821254-26821283)
chr1 (238-267)||(31880248-31880277)
chr1 (238-267)||(35864779-35864808)
chr1 (235-267)||(4369217-4369249)
chr1 (235-267)||(9780586-9780618)
chr1 (235-267)||(10555604-10555636)
chr1 (189-217)||(14420852-14420880)
chr1 (235-267)||(16690184-16690216)
chr1 (239-267)||(17337973-17338001)
chr1 (235-267)||(41885523-41885555)
chr1 (235-267)||(50846457-50846489)
[»] chr5 (16 HSPs)
chr5 (235-267)||(11113060-11113092)
chr5 (189-220)||(2172606-2172637)
chr5 (189-220)||(3851109-3851140)
chr5 (189-220)||(15716018-15716049)
chr5 (189-220)||(27581550-27581581)
chr5 (189-220)||(31125675-31125706)
chr5 (189-219)||(34728853-34728883)
chr5 (189-219)||(41960330-41960360)
chr5 (238-267)||(3637482-3637511)
chr5 (189-222)||(11690435-11690468)
chr5 (238-267)||(30896214-30896243)
chr5 (235-267)||(8647209-8647241)
chr5 (239-267)||(19442858-19442886)
chr5 (235-267)||(24363059-24363091)
chr5 (239-267)||(34598153-34598181)
chr5 (239-267)||(39731331-39731359)
[»] scaffold0262 (1 HSPs)
scaffold0262 (189-220)||(833-864)
[»] scaffold0041 (1 HSPs)
scaffold0041 (189-220)||(28425-28456)
[»] chr6 (7 HSPs)
chr6 (189-220)||(26570109-26570140)
chr6 (189-220)||(32400789-32400820)
chr6 (189-226)||(5524028-5524065)
chr6 (239-267)||(767787-767815)
chr6 (235-267)||(7575680-7575712)
chr6 (235-267)||(19680911-19680943)
chr6 (235-267)||(32819944-32819976)
[»] scaffold2128 (1 HSPs)
scaffold2128 (238-267)||(613-642)
[»] scaffold0032 (1 HSPs)
scaffold0032 (238-267)||(36327-36356)
[»] scaffold0508 (1 HSPs)
scaffold0508 (239-267)||(6739-6767)
[»] scaffold0063 (1 HSPs)
scaffold0063 (180-220)||(51770-51810)
[»] scaffold0011 (1 HSPs)
scaffold0011 (239-267)||(225133-225161)


Alignment Details
Target: chr3 (Bit Score: 77; Significance: 8e-36; HSPs: 24)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 26 - 151
Target Start/End: Original strand, 54442886 - 54443011
Alignment:
Q  26 tgttttaacaagtagaagtgtagaaccggtcatcaggtaaggtatnnnnnnntataggtaacgtggcatgctacaagtgggtgtgttcaatcgcaagtgt 125  Q
    |||||||||||||||||||||||||||||||| |||||||| |||       |||||||||||||||||||||||| |||||||||||||||||||||||    
T  54442886 tgttttaacaagtagaagtgtagaaccggtcagcaggtaagttataaaaaaatataggtaacgtggcatgctacaaatgggtgtgttcaatcgcaagtgt 54442985  T
Q  126 taaaaagcctgcaactaacattgctc 151  Q
    ||||| || |||| ||| ||||||||    
T  54442986 taaaacgcatgcagctagcattgctc 54443011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 188 - 222
Target Start/End: Original strand, 54617476 - 54617510
Alignment:
Q  188 aaaactcatatgtagaattcatattttttaatata 222  Q
    |||||||||||||||||||||||||||||||||||    
T  54617476 aaaactcatatgtagaattcatattttttaatata 54617510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 189 - 220
Target Start/End: Complemental strand, 6224082 - 6224051
Alignment:
Q  189 aaactcatatgtagaattcatattttttaata 220  Q
    ||||||||||||||||||||||||||||||||    
T  6224082 aaactcatatgtagaattcatattttttaata 6224051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 189 - 220
Target Start/End: Complemental strand, 26704084 - 26704053
Alignment:
Q  189 aaactcatatgtagaattcatattttttaata 220  Q
    ||||||||||||||||||||||||||||||||    
T  26704084 aaactcatatgtagaattcatattttttaata 26704053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 189 - 220
Target Start/End: Complemental strand, 39132222 - 39132191
Alignment:
Q  189 aaactcatatgtagaattcatattttttaata 220  Q
    ||||||||||||||||||||||||||||||||    
T  39132222 aaactcatatgtagaattcatattttttaata 39132191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 189 - 220
Target Start/End: Complemental strand, 40629860 - 40629829
Alignment:
Q  189 aaactcatatgtagaattcatattttttaata 220  Q
    ||||||||||||||||||||||||||||||||    
T  40629860 aaactcatatgtagaattcatattttttaata 40629829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 182 - 220
Target Start/End: Complemental strand, 17551883 - 17551845
Alignment:
Q  182 ttaacgaaaactcatatgtagaattcatattttttaata 220  Q
    |||||| ||||||||||||||||||||||||||| ||||    
T  17551883 ttaacgtaaactcatatgtagaattcatatttttaaata 17551845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 238 - 267
Target Start/End: Complemental strand, 160572 - 160543
Alignment:
Q  238 gtatatttataaggaccaaaaacatattta 267  Q
    ||||||||||||||||||||||||||||||    
T  160572 gtatatttataaggaccaaaaacatattta 160543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 238 - 267
Target Start/End: Complemental strand, 3135802 - 3135773
Alignment:
Q  238 gtatatttataaggaccaaaaacatattta 267  Q
    ||||||||||||||||||||||||||||||    
T  3135802 gtatatttataaggaccaaaaacatattta 3135773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 189 - 222
Target Start/End: Complemental strand, 38098528 - 38098495
Alignment:
Q  189 aaactcatatgtagaattcatattttttaatata 222  Q
    ||||||||||||||||||||||||||| ||||||    
T  38098528 aaactcatatgtagaattcatatttttgaatata 38098495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 238 - 267
Target Start/End: Original strand, 42880113 - 42880142
Alignment:
Q  238 gtatatttataaggaccaaaaacatattta 267  Q
    ||||||||||||||||||||||||||||||    
T  42880113 gtatatttataaggaccaaaaacatattta 42880142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 238 - 267
Target Start/End: Original strand, 43081601 - 43081630
Alignment:
Q  238 gtatatttataaggaccaaaaacatattta 267  Q
    ||||||||||||||||||||||||||||||    
T  43081601 gtatatttataaggaccaaaaacatattta 43081630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 238 - 267
Target Start/End: Complemental strand, 43862561 - 43862532
Alignment:
Q  238 gtatatttataaggaccaaaaacatattta 267  Q
    ||||||||||||||||||||||||||||||    
T  43862561 gtatatttataaggaccaaaaacatattta 43862532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 238 - 267
Target Start/End: Complemental strand, 43974039 - 43974010
Alignment:
Q  238 gtatatttataaggaccaaaaacatattta 267  Q
    ||||||||||||||||||||||||||||||    
T  43974039 gtatatttataaggaccaaaaacatattta 43974010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 187 - 220
Target Start/End: Complemental strand, 47979211 - 47979178
Alignment:
Q  187 gaaaactcatatgtagaattcatattttttaata 220  Q
    ||||||||||||||||||||||||||||| ||||    
T  47979211 gaaaactcatatgtagaattcatatttttaaata 47979178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 238 - 267
Target Start/End: Original strand, 51335796 - 51335825
Alignment:
Q  238 gtatatttataaggaccaaaaacatattta 267  Q
    ||||||||||||||||||||||||||||||    
T  51335796 gtatatttataaggaccaaaaacatattta 51335825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 239 - 267
Target Start/End: Original strand, 19114081 - 19114109
Alignment:
Q  239 tatatttataaggaccaaaaacatattta 267  Q
    |||||||||||||||||||||||||||||    
T  19114081 tatatttataaggaccaaaaacatattta 19114109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 235 - 267
Target Start/End: Original strand, 26324662 - 26324694
Alignment:
Q  235 ttagtatatttataaggaccaaaaacatattta 267  Q
    |||||||||||||| ||||||||||||||||||    
T  26324662 ttagtatatttatagggaccaaaaacatattta 26324694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 188 - 220
Target Start/End: Complemental strand, 33898879 - 33898847
Alignment:
Q  188 aaaactcatatgtagaattcatattttttaata 220  Q
    |||||||||||||||||||||||||||| ||||    
T  33898879 aaaactcatatgtagaattcatatttttaaata 33898847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 235 - 267
Target Start/End: Original strand, 39996657 - 39996689
Alignment:
Q  235 ttagtatatttataaggaccaaaaacatattta 267  Q
    ||||||||||||||||||||||||| |||||||    
T  39996657 ttagtatatttataaggaccaaaaatatattta 39996689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 235 - 267
Target Start/End: Complemental strand, 42236106 - 42236074
Alignment:
Q  235 ttagtatatttataaggaccaaaaacatattta 267  Q
    |||||||||||||||| ||||||||||||||||    
T  42236106 ttagtatatttataagaaccaaaaacatattta 42236074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 235 - 267
Target Start/End: Complemental strand, 43140560 - 43140528
Alignment:
Q  235 ttagtatatttataaggaccaaaaacatattta 267  Q
    |||||||||||||| ||||||||||||||||||    
T  43140560 ttagtatatttatagggaccaaaaacatattta 43140528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 239 - 267
Target Start/End: Complemental strand, 48381031 - 48381003
Alignment:
Q  239 tatatttataaggaccaaaaacatattta 267  Q
    |||||||||||||||||||||||||||||    
T  48381031 tatatttataaggaccaaaaacatattta 48381003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 189 - 225
Target Start/End: Complemental strand, 54279863 - 54279827
Alignment:
Q  189 aaactcatatgtagaattcatattttttaatatattt 225  Q
    ||||||||||||||||||||||||||| |||| ||||    
T  54279863 aaactcatatgtagaattcatatttttaaataaattt 54279827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 77; Significance: 8e-36; HSPs: 19)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 26 - 151
Target Start/End: Original strand, 13747259 - 13747384
Alignment:
Q  26 tgttttaacaagtagaagtgtagaaccggtcatcaggtaaggtatnnnnnnntataggtaacgtggcatgctacaagtgggtgtgttcaatcgcaagtgt 125  Q
    |||||||||||||||||||||||||||||||| |||| ||| |||       ||||||||||||||||||||||||||||||||||||||||||||||||    
T  13747259 tgttttaacaagtagaagtgtagaaccggtcagcaggcaagttataaaaaaatataggtaacgtggcatgctacaagtgggtgtgttcaatcgcaagtgt 13747358  T
Q  126 taaaaagcctgcaactaacattgctc 151  Q
    ||||| || |||| ||| ||||||||    
T  13747359 taaaacgcatgcagctagcattgctc 13747384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 182 - 220
Target Start/End: Complemental strand, 29386740 - 29386702
Alignment:
Q  182 ttaacgaaaactcatatgtagaattcatattttttaata 220  Q
    |||| ||||||||||||||||||||||||||||||||||    
T  29386740 ttaaagaaaactcatatgtagaattcatattttttaata 29386702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 189 - 220
Target Start/End: Original strand, 18587499 - 18587530
Alignment:
Q  189 aaactcatatgtagaattcatattttttaata 220  Q
    ||||||||||||||||||||||||||||||||    
T  18587499 aaactcatatgtagaattcatattttttaata 18587530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 189 - 220
Target Start/End: Complemental strand, 32400935 - 32400904
Alignment:
Q  189 aaactcatatgtagaattcatattttttaata 220  Q
    ||||||||||||||||||||||||||||||||    
T  32400935 aaactcatatgtagaattcatattttttaata 32400904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 189 - 220
Target Start/End: Original strand, 36741562 - 36741593
Alignment:
Q  189 aaactcatatgtagaattcatattttttaata 220  Q
    ||||||||||||||||||||||||||||||||    
T  36741562 aaactcatatgtagaattcatattttttaata 36741593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 189 - 220
Target Start/End: Complemental strand, 38203873 - 38203842
Alignment:
Q  189 aaactcatatgtagaattcatattttttaata 220  Q
    ||||||||||||||||||||||||||||||||    
T  38203873 aaactcatatgtagaattcatattttttaata 38203842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 189 - 220
Target Start/End: Complemental strand, 39120465 - 39120434
Alignment:
Q  189 aaactcatatgtagaattcatattttttaata 220  Q
    ||||||||||||||||||||||||||||||||    
T  39120465 aaactcatatgtagaattcatattttttaata 39120434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 238 - 267
Target Start/End: Complemental strand, 12611715 - 12611686
Alignment:
Q  238 gtatatttataaggaccaaaaacatattta 267  Q
    ||||||||||||||||||||||||||||||    
T  12611715 gtatatttataaggaccaaaaacatattta 12611686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 189 - 226
Target Start/End: Complemental strand, 40768414 - 40768377
Alignment:
Q  189 aaactcatatgtagaattcatattttttaatatatttt 226  Q
    ||||||||||||| |||||||||||||||||| |||||    
T  40768414 aaactcatatgtataattcatattttttaataaatttt 40768377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 239 - 267
Target Start/End: Original strand, 1722191 - 1722219
Alignment:
Q  239 tatatttataaggaccaaaaacatattta 267  Q
    |||||||||||||||||||||||||||||    
T  1722191 tatatttataaggaccaaaaacatattta 1722219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 239 - 267
Target Start/End: Original strand, 4831593 - 4831621
Alignment:
Q  239 tatatttataaggaccaaaaacatattta 267  Q
    |||||||||||||||||||||||||||||    
T  4831593 tatatttataaggaccaaaaacatattta 4831621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 239 - 267
Target Start/End: Original strand, 6376743 - 6376771
Alignment:
Q  239 tatatttataaggaccaaaaacatattta 267  Q
    |||||||||||||||||||||||||||||    
T  6376743 tatatttataaggaccaaaaacatattta 6376771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 189 - 225
Target Start/End: Complemental strand, 10377851 - 10377815
Alignment:
Q  189 aaactcatatgtagaattcatattttttaatatattt 225  Q
    ||||||||||||||||||||||||||| |||| ||||    
T  10377851 aaactcatatgtagaattcatatttttgaataaattt 10377815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 239 - 267
Target Start/End: Original strand, 10590748 - 10590776
Alignment:
Q  239 tatatttataaggaccaaaaacatattta 267  Q
    |||||||||||||||||||||||||||||    
T  10590748 tatatttataaggaccaaaaacatattta 10590776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 235 - 267
Target Start/End: Original strand, 23388813 - 23388845
Alignment:
Q  235 ttagtatatttataaggaccaaaaacatattta 267  Q
    |||||||||||||| ||||||||||||||||||    
T  23388813 ttagtatatttatagggaccaaaaacatattta 23388845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 239 - 267
Target Start/End: Complemental strand, 29134088 - 29134060
Alignment:
Q  239 tatatttataaggaccaaaaacatattta 267  Q
    |||||||||||||||||||||||||||||    
T  29134088 tatatttataaggaccaaaaacatattta 29134060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 189 - 217
Target Start/End: Complemental strand, 34423205 - 34423177
Alignment:
Q  189 aaactcatatgtagaattcatatttttta 217  Q
    |||||||||||||||||||||||||||||    
T  34423205 aaactcatatgtagaattcatatttttta 34423177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 238 - 266
Target Start/End: Complemental strand, 44043426 - 44043398
Alignment:
Q  238 gtatatttataaggaccaaaaacatattt 266  Q
    |||||||||||||||||||||||||||||    
T  44043426 gtatatttataaggaccaaaaacatattt 44043398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 235 - 267
Target Start/End: Original strand, 44537882 - 44537914
Alignment:
Q  235 ttagtatatttataaggaccaaaaacatattta 267  Q
    |||||||||||||||||||||| ||||||||||    
T  44537882 ttagtatatttataaggaccaacaacatattta 44537914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 62; Significance: 7e-27; HSPs: 27)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 152 - 229
Target Start/End: Original strand, 45024152 - 45024229
Alignment:
Q  152 ttataagagagtgtgcgcttaaacgaaatattaacgaaaactcatatgtagaattcatattttttaatatattttgta 229  Q
    |||||| |||||||| |||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||    
T  45024152 ttataaaagagtgtgtgcttaaacgaaatattaacgaaaactcatatgtataatttatattttttaatatattttgta 45024229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 189 - 222
Target Start/End: Complemental strand, 44370683 - 44370650
Alignment:
Q  189 aaactcatatgtagaattcatattttttaatata 222  Q
    ||||||||||||||||||||||||||||||||||    
T  44370683 aaactcatatgtagaattcatattttttaatata 44370650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 180 - 220
Target Start/End: Original strand, 4415590 - 4415630
Alignment:
Q  180 tattaacgaaaactcatatgtagaattcatattttttaata 220  Q
    |||||| | ||||||||||||||||||||||||||||||||    
T  4415590 tattaaagtaaactcatatgtagaattcatattttttaata 4415630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 235 - 267
Target Start/End: Original strand, 45024580 - 45024612
Alignment:
Q  235 ttagtatatttataaggaccaaaaacatattta 267  Q
    |||||||||||||||||||||||||||||||||    
T  45024580 ttagtatatttataaggaccaaaaacatattta 45024612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 189 - 220
Target Start/End: Original strand, 874868 - 874899
Alignment:
Q  189 aaactcatatgtagaattcatattttttaata 220  Q
    ||||||||||||||||||||||||||||||||    
T  874868 aaactcatatgtagaattcatattttttaata 874899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 189 - 220
Target Start/End: Original strand, 1620568 - 1620599
Alignment:
Q  189 aaactcatatgtagaattcatattttttaata 220  Q
    ||||||||||||||||||||||||||||||||    
T  1620568 aaactcatatgtagaattcatattttttaata 1620599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 189 - 220
Target Start/End: Complemental strand, 4116185 - 4116154
Alignment:
Q  189 aaactcatatgtagaattcatattttttaata 220  Q
    ||||||||||||||||||||||||||||||||    
T  4116185 aaactcatatgtagaattcatattttttaata 4116154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 189 - 220
Target Start/End: Complemental strand, 6213243 - 6213212
Alignment:
Q  189 aaactcatatgtagaattcatattttttaata 220  Q
    ||||||||||||||||||||||||||||||||    
T  6213243 aaactcatatgtagaattcatattttttaata 6213212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 189 - 220
Target Start/End: Complemental strand, 14075533 - 14075502
Alignment:
Q  189 aaactcatatgtagaattcatattttttaata 220  Q
    ||||||||||||||||||||||||||||||||    
T  14075533 aaactcatatgtagaattcatattttttaata 14075502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 189 - 220
Target Start/End: Complemental strand, 16071315 - 16071284
Alignment:
Q  189 aaactcatatgtagaattcatattttttaata 220  Q
    ||||||||||||||||||||||||||||||||    
T  16071315 aaactcatatgtagaattcatattttttaata 16071284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 189 - 220
Target Start/End: Original strand, 16071745 - 16071776
Alignment:
Q  189 aaactcatatgtagaattcatattttttaata 220  Q
    ||||||||||||||||||||||||||||||||    
T  16071745 aaactcatatgtagaattcatattttttaata 16071776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 189 - 220
Target Start/End: Complemental strand, 19054586 - 19054555
Alignment:
Q  189 aaactcatatgtagaattcatattttttaata 220  Q
    ||||||||||||||||||||||||||||||||    
T  19054586 aaactcatatgtagaattcatattttttaata 19054555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 189 - 220
Target Start/End: Original strand, 42511816 - 42511847
Alignment:
Q  189 aaactcatatgtagaattcatattttttaata 220  Q
    ||||||||||||||||||||||||||||||||    
T  42511816 aaactcatatgtagaattcatattttttaata 42511847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 189 - 220
Target Start/End: Original strand, 45756433 - 45756464
Alignment:
Q  189 aaactcatatgtagaattcatattttttaata 220  Q
    ||||||||||||||||||||||||||||||||    
T  45756433 aaactcatatgtagaattcatattttttaata 45756464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 190 - 220
Target Start/End: Complemental strand, 17318918 - 17318888
Alignment:
Q  190 aactcatatgtagaattcatattttttaata 220  Q
    |||||||||||||||||||||||||||||||    
T  17318918 aactcatatgtagaattcatattttttaata 17318888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 188 - 218
Target Start/End: Original strand, 39150728 - 39150758
Alignment:
Q  188 aaaactcatatgtagaattcatattttttaa 218  Q
    |||||||||||||||||||||||||||||||    
T  39150728 aaaactcatatgtagaattcatattttttaa 39150758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 238 - 267
Target Start/End: Original strand, 26918240 - 26918269
Alignment:
Q  238 gtatatttataaggaccaaaaacatattta 267  Q
    ||||||||||||||||||||||||||||||    
T  26918240 gtatatttataaggaccaaaaacatattta 26918269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 238 - 267
Target Start/End: Original strand, 29097542 - 29097571
Alignment:
Q  238 gtatatttataaggaccaaaaacatattta 267  Q
    ||||||||||||||||||||||||||||||    
T  29097542 gtatatttataaggaccaaaaacatattta 29097571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 189 - 226
Target Start/End: Complemental strand, 43594586 - 43594549
Alignment:
Q  189 aaactcatatgtagaattcatattttttaatatatttt 226  Q
    ||||||||||||||||||||||||||| |||| |||||    
T  43594586 aaactcatatgtagaattcatatttttgaataaatttt 43594549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 238 - 267
Target Start/End: Original strand, 55244237 - 55244266
Alignment:
Q  238 gtatatttataaggaccaaaaacatattta 267  Q
    ||||||||||||||||||||||||||||||    
T  55244237 gtatatttataaggaccaaaaacatattta 55244266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 239 - 267
Target Start/End: Original strand, 1309764 - 1309792
Alignment:
Q  239 tatatttataaggaccaaaaacatattta 267  Q
    |||||||||||||||||||||||||||||    
T  1309764 tatatttataaggaccaaaaacatattta 1309792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 235 - 267
Target Start/End: Original strand, 30031948 - 30031980
Alignment:
Q  235 ttagtatatttataaggaccaaaaacatattta 267  Q
    |||||||||||||| ||||||||||||||||||    
T  30031948 ttagtatatttatagggaccaaaaacatattta 30031980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 235 - 267
Target Start/End: Original strand, 37255560 - 37255592
Alignment:
Q  235 ttagtatatttataaggaccaaaaacatattta 267  Q
    |||||||||||||| ||||||||||||||||||    
T  37255560 ttagtatatttatagggaccaaaaacatattta 37255592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 234 - 266
Target Start/End: Original strand, 38104074 - 38104106
Alignment:
Q  234 tttagtatatttataaggaccaaaaacatattt 266  Q
    ||||||||||||||| |||||||||||||||||    
T  38104074 tttagtatatttatagggaccaaaaacatattt 38104106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 235 - 267
Target Start/End: Original strand, 39911066 - 39911098
Alignment:
Q  235 ttagtatatttataaggaccaaaaacatattta 267  Q
    |||||||||||||| ||||||||||||||||||    
T  39911066 ttagtatatttatagggaccaaaaacatattta 39911098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 235 - 267
Target Start/End: Original strand, 40186541 - 40186573
Alignment:
Q  235 ttagtatatttataaggaccaaaaacatattta 267  Q
    |||||||||||||| ||||||||||||||||||    
T  40186541 ttagtatatttatagggaccaaaaacatattta 40186573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 239 - 267
Target Start/End: Complemental strand, 43067262 - 43067234
Alignment:
Q  239 tatatttataaggaccaaaaacatattta 267  Q
    |||||||||||||||||||||||||||||    
T  43067262 tatatttataaggaccaaaaacatattta 43067234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.0000000004; HSPs: 24)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 189 - 222
Target Start/End: Original strand, 8841861 - 8841894
Alignment:
Q  189 aaactcatatgtagaattcatattttttaatata 222  Q
    ||||||||||||||||||||||||||||||||||    
T  8841861 aaactcatatgtagaattcatattttttaatata 8841894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 235 - 267
Target Start/End: Original strand, 10673414 - 10673446
Alignment:
Q  235 ttagtatatttataaggaccaaaaacatattta 267  Q
    |||||||||||||||||||||||||||||||||    
T  10673414 ttagtatatttataaggaccaaaaacatattta 10673446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 180 - 220
Target Start/End: Complemental strand, 10983641 - 10983601
Alignment:
Q  180 tattaacgaaaactcatatgtagaattcatattttttaata 220  Q
    |||||| | ||||||||||||||||||||||||||||||||    
T  10983641 tattaaagtaaactcatatgtagaattcatattttttaata 10983601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 189 - 220
Target Start/End: Original strand, 2659912 - 2659943
Alignment:
Q  189 aaactcatatgtagaattcatattttttaata 220  Q
    ||||||||||||||||||||||||||||||||    
T  2659912 aaactcatatgtagaattcatattttttaata 2659943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 189 - 220
Target Start/End: Original strand, 7016627 - 7016658
Alignment:
Q  189 aaactcatatgtagaattcatattttttaata 220  Q
    ||||||||||||||||||||||||||||||||    
T  7016627 aaactcatatgtagaattcatattttttaata 7016658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 189 - 232
Target Start/End: Original strand, 14136506 - 14136549
Alignment:
Q  189 aaactcatatgtagaattcatattttttaatatattttgtaaaa 232  Q
    ||||||||||||| |||||||||||||||||| |||||| ||||    
T  14136506 aaactcatatgtaaaattcatattttttaataaattttgcaaaa 14136549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 189 - 220
Target Start/End: Original strand, 18252594 - 18252625
Alignment:
Q  189 aaactcatatgtagaattcatattttttaata 220  Q
    ||||||||||||||||||||||||||||||||    
T  18252594 aaactcatatgtagaattcatattttttaata 18252625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 189 - 220
Target Start/End: Complemental strand, 26534235 - 26534204
Alignment:
Q  189 aaactcatatgtagaattcatattttttaata 220  Q
    ||||||||||||||||||||||||||||||||    
T  26534235 aaactcatatgtagaattcatattttttaata 26534204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 189 - 220
Target Start/End: Complemental strand, 28525868 - 28525837
Alignment:
Q  189 aaactcatatgtagaattcatattttttaata 220  Q
    ||||||||||||||||||||||||||||||||    
T  28525868 aaactcatatgtagaattcatattttttaata 28525837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 189 - 220
Target Start/End: Original strand, 35160708 - 35160739
Alignment:
Q  189 aaactcatatgtagaattcatattttttaata 220  Q
    ||||||||||||||||||||||||||||||||    
T  35160708 aaactcatatgtagaattcatattttttaata 35160739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 189 - 220
Target Start/End: Original strand, 40666045 - 40666076
Alignment:
Q  189 aaactcatatgtagaattcatattttttaata 220  Q
    ||||||||||||||||||||||||||||||||    
T  40666045 aaactcatatgtagaattcatattttttaata 40666076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 182 - 220
Target Start/End: Original strand, 27343386 - 27343424
Alignment:
Q  182 ttaacgaaaactcatatgtagaattcatattttttaata 220  Q
    |||||| |||||||||||||||||||||||| |||||||    
T  27343386 ttaacgtaaactcatatgtagaattcatattatttaata 27343424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 189 - 222
Target Start/End: Original strand, 20052073 - 20052106
Alignment:
Q  189 aaactcatatgtagaattcatattttttaatata 222  Q
    ||||||||||||||||||||||||| ||||||||    
T  20052073 aaactcatatgtagaattcatatttcttaatata 20052106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 238 - 267
Target Start/End: Complemental strand, 22199659 - 22199630
Alignment:
Q  238 gtatatttataaggaccaaaaacatattta 267  Q
    ||||||||||||||||||||||||||||||    
T  22199659 gtatatttataaggaccaaaaacatattta 22199630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 189 - 218
Target Start/End: Original strand, 34010460 - 34010489
Alignment:
Q  189 aaactcatatgtagaattcatattttttaa 218  Q
    ||||||||||||||||||||||||||||||    
T  34010460 aaactcatatgtagaattcatattttttaa 34010489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 238 - 267
Target Start/End: Complemental strand, 35213411 - 35213382
Alignment:
Q  238 gtatatttataaggaccaaaaacatattta 267  Q
    ||||||||||||||||||||||||||||||    
T  35213411 gtatatttataaggaccaaaaacatattta 35213382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 239 - 267
Target Start/End: Complemental strand, 13349312 - 13349284
Alignment:
Q  239 tatatttataaggaccaaaaacatattta 267  Q
    |||||||||||||||||||||||||||||    
T  13349312 tatatttataaggaccaaaaacatattta 13349284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 189 - 232
Target Start/End: Original strand, 32721873 - 32721917
Alignment:
Q  189 aaactcatatgtagaattcatattttttaat-atattttgtaaaa 232  Q
    ||||||||||||||||||||||||||| ||| | |||||||||||    
T  32721873 aaactcatatgtagaattcatatttttcaataaaattttgtaaaa 32721917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 235 - 267
Target Start/End: Original strand, 38389894 - 38389926
Alignment:
Q  235 ttagtatatttataaggaccaaaaacatattta 267  Q
    |||||||||||||||||| ||||||||||||||    
T  38389894 ttagtatatttataaggatcaaaaacatattta 38389926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 235 - 267
Target Start/End: Complemental strand, 40668463 - 40668431
Alignment:
Q  235 ttagtatatttataaggaccaaaaacatattta 267  Q
    |||||||||||||| ||||||||||||||||||    
T  40668463 ttagtatatttatagggaccaaaaacatattta 40668431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 235 - 267
Target Start/End: Complemental strand, 42148475 - 42148443
Alignment:
Q  235 ttagtatatttataaggaccaaaaacatattta 267  Q
    |||||||||||||| ||||||||||||||||||    
T  42148475 ttagtatatttatagggaccaaaaacatattta 42148443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 235 - 267
Target Start/End: Original strand, 42641382 - 42641414
Alignment:
Q  235 ttagtatatttataaggaccaaaaacatattta 267  Q
    |||||||||||||| ||||||||||||||||||    
T  42641382 ttagtatatttatagggaccaaaaacatattta 42641414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 235 - 267
Target Start/End: Complemental strand, 42787687 - 42787655
Alignment:
Q  235 ttagtatatttataaggaccaaaaacatattta 267  Q
    ||||||||||||||||||| |||||||||||||    
T  42787687 ttagtatatttataaggactaaaaacatattta 42787655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 235 - 267
Target Start/End: Complemental strand, 45509664 - 45509632
Alignment:
Q  235 ttagtatatttataaggaccaaaaacatattta 267  Q
    |||||||||||||| ||||||||||||||||||    
T  45509664 ttagtatatttatagggaccaaaaacatattta 45509632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 34; Significance: 0.0000000004; HSPs: 20)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 189 - 226
Target Start/End: Original strand, 1976002 - 1976039
Alignment:
Q  189 aaactcatatgtagaattcatattttttaatatatttt 226  Q
    |||||||||||||||||||||||||||||||| |||||    
T  1976002 aaactcatatgtagaattcatattttttaataaatttt 1976039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 235 - 267
Target Start/End: Complemental strand, 1694428 - 1694396
Alignment:
Q  235 ttagtatatttataaggaccaaaaacatattta 267  Q
    |||||||||||||||||||||||||||||||||    
T  1694428 ttagtatatttataaggaccaaaaacatattta 1694396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 235 - 267
Target Start/End: Original strand, 32457198 - 32457230
Alignment:
Q  235 ttagtatatttataaggaccaaaaacatattta 267  Q
    |||||||||||||||||||||||||||||||||    
T  32457198 ttagtatatttataaggaccaaaaacatattta 32457230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 235 - 267
Target Start/End: Complemental strand, 46613385 - 46613353
Alignment:
Q  235 ttagtatatttataaggaccaaaaacatattta 267  Q
    |||||||||||||||||||||||||||||||||    
T  46613385 ttagtatatttataaggaccaaaaacatattta 46613353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 189 - 220
Target Start/End: Complemental strand, 4789236 - 4789205
Alignment:
Q  189 aaactcatatgtagaattcatattttttaata 220  Q
    ||||||||||||||||||||||||||||||||    
T  4789236 aaactcatatgtagaattcatattttttaata 4789205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 189 - 220
Target Start/End: Original strand, 19228401 - 19228432
Alignment:
Q  189 aaactcatatgtagaattcatattttttaata 220  Q
    ||||||||||||||||||||||||||||||||    
T  19228401 aaactcatatgtagaattcatattttttaata 19228432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 182 - 220
Target Start/End: Original strand, 17177702 - 17177740
Alignment:
Q  182 ttaacgaaaactcatatgtagaattcatattttttaata 220  Q
    |||||| ||||||||||||||||||||||||||| ||||    
T  17177702 ttaacgtaaactcatatgtagaattcatatttttgaata 17177740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 189 - 227
Target Start/End: Original strand, 34327023 - 34327061
Alignment:
Q  189 aaactcatatgtagaattcatattttttaatatattttg 227  Q
    ||||||||||||||||||||||||||| |||| ||||||    
T  34327023 aaactcatatgtagaattcatatttttgaataaattttg 34327061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 234 - 267
Target Start/End: Original strand, 23847823 - 23847856
Alignment:
Q  234 tttagtatatttataaggaccaaaaacatattta 267  Q
    |||||||||||||||||||| |||||||||||||    
T  23847823 tttagtatatttataaggactaaaaacatattta 23847856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 238 - 267
Target Start/End: Complemental strand, 43185068 - 43185039
Alignment:
Q  238 gtatatttataaggaccaaaaacatattta 267  Q
    ||||||||||||||||||||||||||||||    
T  43185068 gtatatttataaggaccaaaaacatattta 43185039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 238 - 267
Target Start/End: Complemental strand, 43542709 - 43542680
Alignment:
Q  238 gtatatttataaggaccaaaaacatattta 267  Q
    ||||||||||||||||||||||||||||||    
T  43542709 gtatatttataaggaccaaaaacatattta 43542680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 239 - 267
Target Start/End: Complemental strand, 584890 - 584862
Alignment:
Q  239 tatatttataaggaccaaaaacatattta 267  Q
    |||||||||||||||||||||||||||||    
T  584890 tatatttataaggaccaaaaacatattta 584862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 235 - 267
Target Start/End: Original strand, 1023706 - 1023738
Alignment:
Q  235 ttagtatatttataaggaccaaaaacatattta 267  Q
    |||||||||||||| ||||||||||||||||||    
T  1023706 ttagtatatttatagggaccaaaaacatattta 1023738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 235 - 267
Target Start/End: Complemental strand, 1730397 - 1730365
Alignment:
Q  235 ttagtatatttataaggaccaaaaacatattta 267  Q
    |||||||||||||| ||||||||||||||||||    
T  1730397 ttagtatatttatagggaccaaaaacatattta 1730365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 239 - 267
Target Start/End: Original strand, 15076575 - 15076603
Alignment:
Q  239 tatatttataaggaccaaaaacatattta 267  Q
    |||||||||||||||||||||||||||||    
T  15076575 tatatttataaggaccaaaaacatattta 15076603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 235 - 267
Target Start/End: Original strand, 22867312 - 22867344
Alignment:
Q  235 ttagtatatttataaggaccaaaaacatattta 267  Q
    |||||||||||||| ||||||||||||||||||    
T  22867312 ttagtatatttatagggaccaaaaacatattta 22867344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 239 - 267
Target Start/End: Original strand, 30952803 - 30952831
Alignment:
Q  239 tatatttataaggaccaaaaacatattta 267  Q
    |||||||||||||||||||||||||||||    
T  30952803 tatatttataaggaccaaaaacatattta 30952831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 239 - 267
Target Start/End: Complemental strand, 40366719 - 40366691
Alignment:
Q  239 tatatttataaggaccaaaaacatattta 267  Q
    |||||||||||||||||||||||||||||    
T  40366719 tatatttataaggaccaaaaacatattta 40366691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 239 - 267
Target Start/End: Original strand, 41014017 - 41014045
Alignment:
Q  239 tatatttataaggaccaaaaacatattta 267  Q
    |||||||||||||||||||||||||||||    
T  41014017 tatatttataaggaccaaaaacatattta 41014045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 239 - 267
Target Start/End: Complemental strand, 44480835 - 44480807
Alignment:
Q  239 tatatttataaggaccaaaaacatattta 267  Q
    |||||||||||||||||||||||||||||    
T  44480835 tatatttataaggaccaaaaacatattta 44480807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.0000000004; HSPs: 22)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 189 - 222
Target Start/End: Original strand, 3793034 - 3793067
Alignment:
Q  189 aaactcatatgtagaattcatattttttaatata 222  Q
    ||||||||||||||||||||||||||||||||||    
T  3793034 aaactcatatgtagaattcatattttttaatata 3793067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 189 - 222
Target Start/End: Original strand, 19893802 - 19893835
Alignment:
Q  189 aaactcatatgtagaattcatattttttaatata 222  Q
    ||||||||||||||||||||||||||||||||||    
T  19893802 aaactcatatgtagaattcatattttttaatata 19893835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 235 - 267
Target Start/End: Complemental strand, 1053330 - 1053298
Alignment:
Q  235 ttagtatatttataaggaccaaaaacatattta 267  Q
    |||||||||||||||||||||||||||||||||    
T  1053330 ttagtatatttataaggaccaaaaacatattta 1053298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 235 - 267
Target Start/End: Original strand, 4051458 - 4051490
Alignment:
Q  235 ttagtatatttataaggaccaaaaacatattta 267  Q
    |||||||||||||||||||||||||||||||||    
T  4051458 ttagtatatttataaggaccaaaaacatattta 4051490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 189 - 220
Target Start/End: Original strand, 9780256 - 9780287
Alignment:
Q  189 aaactcatatgtagaattcatattttttaata 220  Q
    ||||||||||||||||||||||||||||||||    
T  9780256 aaactcatatgtagaattcatattttttaata 9780287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 189 - 220
Target Start/End: Original strand, 49580072 - 49580103
Alignment:
Q  189 aaactcatatgtagaattcatattttttaata 220  Q
    ||||||||||||||||||||||||||||||||    
T  49580072 aaactcatatgtagaattcatattttttaata 49580103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 189 - 220
Target Start/End: Original strand, 52826669 - 52826700
Alignment:
Q  189 aaactcatatgtagaattcatattttttaata 220  Q
    ||||||||||||||||||||||||||||||||    
T  52826669 aaactcatatgtagaattcatattttttaata 52826700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 189 - 219
Target Start/End: Original strand, 21249013 - 21249043
Alignment:
Q  189 aaactcatatgtagaattcatattttttaat 219  Q
    |||||||||||||||||||||||||||||||    
T  21249013 aaactcatatgtagaattcatattttttaat 21249043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 189 - 219
Target Start/End: Complemental strand, 31683232 - 31683202
Alignment:
Q  189 aaactcatatgtagaattcatattttttaat 219  Q
    |||||||||||||||||||||||||||||||    
T  31683232 aaactcatatgtagaattcatattttttaat 31683202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 238 - 267
Target Start/End: Complemental strand, 20754348 - 20754319
Alignment:
Q  238 gtatatttataaggaccaaaaacatattta 267  Q
    ||||||||||||||||||||||||||||||    
T  20754348 gtatatttataaggaccaaaaacatattta 20754319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 238 - 267
Target Start/End: Original strand, 24973034 - 24973063
Alignment:
Q  238 gtatatttataaggaccaaaaacatattta 267  Q
    ||||||||||||||||||||||||||||||    
T  24973034 gtatatttataaggaccaaaaacatattta 24973063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 238 - 267
Target Start/End: Original strand, 26821254 - 26821283
Alignment:
Q  238 gtatatttataaggaccaaaaacatattta 267  Q
    ||||||||||||||||||||||||||||||    
T  26821254 gtatatttataaggaccaaaaacatattta 26821283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 238 - 267
Target Start/End: Complemental strand, 31880277 - 31880248
Alignment:
Q  238 gtatatttataaggaccaaaaacatattta 267  Q
    ||||||||||||||||||||||||||||||    
T  31880277 gtatatttataaggaccaaaaacatattta 31880248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 238 - 267
Target Start/End: Original strand, 35864779 - 35864808
Alignment:
Q  238 gtatatttataaggaccaaaaacatattta 267  Q
    ||||||||||||||||||||||||||||||    
T  35864779 gtatatttataaggaccaaaaacatattta 35864808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 235 - 267
Target Start/End: Complemental strand, 4369249 - 4369217
Alignment:
Q  235 ttagtatatttataaggaccaaaaacatattta 267  Q
    ||||||||||||||| |||||||||||||||||    
T  4369249 ttagtatatttataaagaccaaaaacatattta 4369217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 235 - 267
Target Start/End: Original strand, 9780586 - 9780618
Alignment:
Q  235 ttagtatatttataaggaccaaaaacatattta 267  Q
    |||||||||||||| ||||||||||||||||||    
T  9780586 ttagtatatttatagggaccaaaaacatattta 9780618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 235 - 267
Target Start/End: Complemental strand, 10555636 - 10555604
Alignment:
Q  235 ttagtatatttataaggaccaaaaacatattta 267  Q
    |||| ||||||||||||||||||||||||||||    
T  10555636 ttagcatatttataaggaccaaaaacatattta 10555604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 189 - 217
Target Start/End: Complemental strand, 14420880 - 14420852
Alignment:
Q  189 aaactcatatgtagaattcatatttttta 217  Q
    |||||||||||||||||||||||||||||    
T  14420880 aaactcatatgtagaattcatatttttta 14420852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 235 - 267
Target Start/End: Complemental strand, 16690216 - 16690184
Alignment:
Q  235 ttagtatatttataaggaccaaaaacatattta 267  Q
    |||||||||||||| ||||||||||||||||||    
T  16690216 ttagtatatttatagggaccaaaaacatattta 16690184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 239 - 267
Target Start/End: Complemental strand, 17338001 - 17337973
Alignment:
Q  239 tatatttataaggaccaaaaacatattta 267  Q
    |||||||||||||||||||||||||||||    
T  17338001 tatatttataaggaccaaaaacatattta 17337973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 235 - 267
Target Start/End: Original strand, 41885523 - 41885555
Alignment:
Q  235 ttagtatatttataaggaccaaaaacatattta 267  Q
    |||||||||||||| ||||||||||||||||||    
T  41885523 ttagtatatttatagggaccaaaaacatattta 41885555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 235 - 267
Target Start/End: Complemental strand, 50846489 - 50846457
Alignment:
Q  235 ttagtatatttataaggaccaaaaacatattta 267  Q
    ||||||||| |||||||||||||||||||||||    
T  50846489 ttagtatatctataaggaccaaaaacatattta 50846457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 235 - 267
Target Start/End: Original strand, 11113060 - 11113092
Alignment:
Q  235 ttagtatatttataaggaccaaaaacatattta 267  Q
    |||||||||||||||||||||||||||||||||    
T  11113060 ttagtatatttataaggaccaaaaacatattta 11113092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 189 - 220
Target Start/End: Original strand, 2172606 - 2172637
Alignment:
Q  189 aaactcatatgtagaattcatattttttaata 220  Q
    ||||||||||||||||||||||||||||||||    
T  2172606 aaactcatatgtagaattcatattttttaata 2172637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 189 - 220
Target Start/End: Complemental strand, 3851140 - 3851109
Alignment:
Q  189 aaactcatatgtagaattcatattttttaata 220  Q
    ||||||||||||||||||||||||||||||||    
T  3851140 aaactcatatgtagaattcatattttttaata 3851109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 189 - 220
Target Start/End: Complemental strand, 15716049 - 15716018
Alignment:
Q  189 aaactcatatgtagaattcatattttttaata 220  Q
    ||||||||||||||||||||||||||||||||    
T  15716049 aaactcatatgtagaattcatattttttaata 15716018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 189 - 220
Target Start/End: Original strand, 27581550 - 27581581
Alignment:
Q  189 aaactcatatgtagaattcatattttttaata 220  Q
    ||||||||||||||||||||||||||||||||    
T  27581550 aaactcatatgtagaattcatattttttaata 27581581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 189 - 220
Target Start/End: Complemental strand, 31125706 - 31125675
Alignment:
Q  189 aaactcatatgtagaattcatattttttaata 220  Q
    ||||||||||||||||||||||||||||||||    
T  31125706 aaactcatatgtagaattcatattttttaata 31125675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 189 - 219
Target Start/End: Complemental strand, 34728883 - 34728853
Alignment:
Q  189 aaactcatatgtagaattcatattttttaat 219  Q
    |||||||||||||||||||||||||||||||    
T  34728883 aaactcatatgtagaattcatattttttaat 34728853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 189 - 219
Target Start/End: Complemental strand, 41960360 - 41960330
Alignment:
Q  189 aaactcatatgtagaattcatattttttaat 219  Q
    |||||||||||||||||||||||||||||||    
T  41960360 aaactcatatgtagaattcatattttttaat 41960330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 238 - 267
Target Start/End: Original strand, 3637482 - 3637511
Alignment:
Q  238 gtatatttataaggaccaaaaacatattta 267  Q
    ||||||||||||||||||||||||||||||    
T  3637482 gtatatttataaggaccaaaaacatattta 3637511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 189 - 222
Target Start/End: Original strand, 11690435 - 11690468
Alignment:
Q  189 aaactcatatgtagaattcatattttttaatata 222  Q
    |||||||||||||||||||| |||||||||||||    
T  11690435 aaactcatatgtagaattcaaattttttaatata 11690468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 238 - 267
Target Start/End: Complemental strand, 30896243 - 30896214
Alignment:
Q  238 gtatatttataaggaccaaaaacatattta 267  Q
    ||||||||||||||||||||||||||||||    
T  30896243 gtatatttataaggaccaaaaacatattta 30896214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 235 - 267
Target Start/End: Original strand, 8647209 - 8647241
Alignment:
Q  235 ttagtatatttataaggaccaaaaacatattta 267  Q
    |||||||||||||| ||||||||||||||||||    
T  8647209 ttagtatatttatagggaccaaaaacatattta 8647241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 239 - 267
Target Start/End: Original strand, 19442858 - 19442886
Alignment:
Q  239 tatatttataaggaccaaaaacatattta 267  Q
    |||||||||||||||||||||||||||||    
T  19442858 tatatttataaggaccaaaaacatattta 19442886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 235 - 267
Target Start/End: Original strand, 24363059 - 24363091
Alignment:
Q  235 ttagtatatttataaggaccaaaaacatattta 267  Q
    |||||||||||||| ||||||||||||||||||    
T  24363059 ttagtatatttatatggaccaaaaacatattta 24363091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 239 - 267
Target Start/End: Complemental strand, 34598181 - 34598153
Alignment:
Q  239 tatatttataaggaccaaaaacatattta 267  Q
    |||||||||||||||||||||||||||||    
T  34598181 tatatttataaggaccaaaaacatattta 34598153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 239 - 267
Target Start/End: Original strand, 39731331 - 39731359
Alignment:
Q  239 tatatttataaggaccaaaaacatattta 267  Q
    |||||||||||||||||||||||||||||    
T  39731331 tatatttataaggaccaaaaacatattta 39731359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0262 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0262
Description:

Target: scaffold0262; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 189 - 220
Target Start/End: Original strand, 833 - 864
Alignment:
Q  189 aaactcatatgtagaattcatattttttaata 220  Q
    ||||||||||||||||||||||||||||||||    
T  833 aaactcatatgtagaattcatattttttaata 864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0041 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 189 - 220
Target Start/End: Complemental strand, 28456 - 28425
Alignment:
Q  189 aaactcatatgtagaattcatattttttaata 220  Q
    ||||||||||||||||||||||||||||||||    
T  28456 aaactcatatgtagaattcatattttttaata 28425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 32; Significance: 0.000000006; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 189 - 220
Target Start/End: Complemental strand, 26570140 - 26570109
Alignment:
Q  189 aaactcatatgtagaattcatattttttaata 220  Q
    ||||||||||||||||||||||||||||||||    
T  26570140 aaactcatatgtagaattcatattttttaata 26570109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 189 - 220
Target Start/End: Complemental strand, 32400820 - 32400789
Alignment:
Q  189 aaactcatatgtagaattcatattttttaata 220  Q
    ||||||||||||||||||||||||||||||||    
T  32400820 aaactcatatgtagaattcatattttttaata 32400789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 189 - 226
Target Start/End: Original strand, 5524028 - 5524065
Alignment:
Q  189 aaactcatatgtagaattcatattttttaatatatttt 226  Q
    ||||||||||||||||||||||||||| |||| |||||    
T  5524028 aaactcatatgtagaattcatatttttaaataaatttt 5524065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 239 - 267
Target Start/End: Complemental strand, 767815 - 767787
Alignment:
Q  239 tatatttataaggaccaaaaacatattta 267  Q
    |||||||||||||||||||||||||||||    
T  767815 tatatttataaggaccaaaaacatattta 767787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 235 - 267
Target Start/End: Complemental strand, 7575712 - 7575680
Alignment:
Q  235 ttagtatatttataaggaccaaaaacatattta 267  Q
    |||||||||||||| ||||||||||||||||||    
T  7575712 ttagtatatttatagggaccaaaaacatattta 7575680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 235 - 267
Target Start/End: Original strand, 19680911 - 19680943
Alignment:
Q  235 ttagtatatttataaggaccaaaaacatattta 267  Q
    |||||||||||||| ||||||||||||||||||    
T  19680911 ttagtatatttatagggaccaaaaacatattta 19680943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 235 - 267
Target Start/End: Complemental strand, 32819976 - 32819944
Alignment:
Q  235 ttagtatatttataaggaccaaaaacatattta 267  Q
    ||||||||||||||||||||||||| |||||||    
T  32819976 ttagtatatttataaggaccaaaaatatattta 32819944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold2128 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold2128
Description:

Target: scaffold2128; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 238 - 267
Target Start/End: Complemental strand, 642 - 613
Alignment:
Q  238 gtatatttataaggaccaaaaacatattta 267  Q
    ||||||||||||||||||||||||||||||    
T  642 gtatatttataaggaccaaaaacatattta 613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0032 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0032
Description:

Target: scaffold0032; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 238 - 267
Target Start/End: Complemental strand, 36356 - 36327
Alignment:
Q  238 gtatatttataaggaccaaaaacatattta 267  Q
    ||||||||||||||||||||||||||||||    
T  36356 gtatatttataaggaccaaaaacatattta 36327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0508 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0508
Description:

Target: scaffold0508; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 239 - 267
Target Start/End: Original strand, 6739 - 6767
Alignment:
Q  239 tatatttataaggaccaaaaacatattta 267  Q
    |||||||||||||||||||||||||||||    
T  6739 tatatttataaggaccaaaaacatattta 6767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0063 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0063
Description:

Target: scaffold0063; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 180 - 220
Target Start/End: Original strand, 51770 - 51810
Alignment:
Q  180 tattaacgaaaactcatatgtagaattcatattttttaata 220  Q
    |||||| | |||||||||| |||||||||||||||||||||    
T  51770 tattaaagtaaactcatatctagaattcatattttttaata 51810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 239 - 267
Target Start/End: Original strand, 225133 - 225161
Alignment:
Q  239 tatatttataaggaccaaaaacatattta 267  Q
    |||||||||||||||||||||||||||||    
T  225133 tatatttataaggaccaaaaacatattta 225161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University