View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3584_low_2 (Length: 521)
Name: NF3584_low_2
Description: NF3584
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3584_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 436; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 436; E-Value: 0
Query Start/End: Original strand, 24 - 503
Target Start/End: Complemental strand, 34797554 - 34797073
Alignment:
| Q |
24 |
attaccccctccctcaacttttgttgcacttgctataaaa-gtgtccaagttcattcaaaaatcagttcataaagtcacttcatttaatactaatgtagc |
122 |
Q |
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| T |
34797554 |
attaccccttccctcaacttttgttgcacttgctataaaaagtgtccaagttcattcaaaaatcagttcataaagtcacttcatttaatactaatgtagc |
34797455 |
T |
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| Q |
123 |
actctagtgttcaaaaggactagttaatcaacaaagacagagaacaagcctatagctactcagtactatgactcatttggtaatatgacacttagcatag |
222 |
Q |
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| T |
34797454 |
actctagtgttcaaaaggactagttaatcaacaaagacagagaacaagcctatagctacttagtactatgactcatttggtaatatgacacttagcatag |
34797355 |
T |
|
| Q |
223 |
ttcaatcaagcaatttcattataatcatctcaaatagtcaacttagacccctaagacttagacactgaataatatttctcaagattaatcaagatttctt |
322 |
Q |
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| T |
34797354 |
ttcaatcaagcaatttcattataatcatctcaaatggtcaacttagacccctaagacttagacactgaataatatttctgaagattaatcaagatttctt |
34797255 |
T |
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| Q |
323 |
tccattttcagcactctctccaaaacagaactaaaccaaaatgaaacaaaaaacctcacctcactttcaggaaccaacaacacctgacaatacacctcat |
422 |
Q |
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| T |
34797254 |
tccattttcagcactctctccaaaacagaactaaaccaaaatgaaacaaaaaaccttacctcactttcaggaaccaacaacacctgacaatacacctcat |
34797155 |
T |
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| Q |
423 |
cgttcccttcctcagcctgcacaaacacacattctatgtcaaaacaataccaagcaaca--agaaccaaactataacaacttt |
503 |
Q |
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| T |
34797154 |
cgttcccttcctcagcctgcacaaacacacattctatgtcaaaa-aataccaagcaacaacagaaccaaactataacaacttt |
34797073 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 376 - 445
Target Start/End: Original strand, 4273981 - 4274050
Alignment:
| Q |
376 |
cctcacctcactttcaggaaccaacaacacctgacaatacacctcatcgttcccttcctcagcctgcaca |
445 |
Q |
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|||||||| | |||||||||||||||| || || |||||||| ||||| ||||||||||||||| |||| |
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| T |
4273981 |
cctcacctgattttcaggaaccaacaagacttggcaatacacttcatcactcccttcctcagcctacaca |
4274050 |
T |
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