View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3584_low_24 (Length: 250)

Name: NF3584_low_24
Description: NF3584
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3584_low_24
NF3584_low_24
[»] chr7 (5 HSPs)
chr7 (88-247)||(8354940-8355099)
chr7 (12-88)||(8354388-8354464)
chr7 (97-200)||(8410644-8410743)
chr7 (88-148)||(8348906-8348966)
chr7 (9-77)||(23944090-23944158)
[»] chr6 (2 HSPs)
chr6 (18-88)||(7556118-7556188)
chr6 (14-68)||(32047197-32047251)
[»] chr5 (8 HSPs)
chr5 (9-77)||(41264387-41264455)
chr5 (18-68)||(2243318-2243368)
chr5 (11-68)||(22780339-22780396)
chr5 (12-68)||(7113610-7113666)
chr5 (9-68)||(7215461-7215520)
chr5 (8-77)||(973125-973194)
chr5 (32-77)||(37077666-37077711)
chr5 (8-56)||(40483716-40483764)
[»] chr1 (7 HSPs)
chr1 (13-68)||(3231981-3232036)
chr1 (9-88)||(15321044-15321123)
chr1 (21-68)||(46080994-46081041)
chr1 (9-67)||(3367806-3367864)
chr1 (18-68)||(52432684-52432734)
chr1 (9-50)||(12145008-12145049)
chr1 (9-61)||(7104295-7104347)
[»] chr8 (2 HSPs)
chr8 (9-68)||(32166628-32166687)
chr8 (9-61)||(29969127-29969179)
[»] chr3 (1 HSPs)
chr3 (21-68)||(54437660-54437707)
[»] chr2 (2 HSPs)
chr2 (9-68)||(38576930-38576989)
chr2 (18-68)||(16576271-16576321)


Alignment Details
Target: chr7 (Bit Score: 152; Significance: 1e-80; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 88 - 247
Target Start/End: Original strand, 8354940 - 8355099
Alignment:
Q  88 agtaggcaataataagtaaaaaccagccaaaactagcaaagctattgagtagccaagaaatagatagatacttttcccttgtaattgtgaattcctcgga 187  Q
    |||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8354940 agtaagcaataataagtaaaaaccagccaaaactagcaaaactattgagtagccaagaaatagatagatacttttcccttgtaattgtgaattcctcgga 8355039  T
Q  188 aattgagaagtggatgtaaactctccttccttgtcatggaagagttcggaagaaaggtgg 247  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8355040 aattgagaagtggatgtaaactctccttccttgtcatggaagagttcggaagaaaggtgg 8355099  T

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Target: chr7; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 12 - 88
Target Start/End: Original strand, 8354388 - 8354464
Alignment:
Q  12 atgaatatcacatgttgaatgaatgatatgtagaagtttaatgttcttgagatgaaactgacaacttgttgtcataa 88  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8354388 atgaatatcacatgttgaatgaaggatatgtagaagtttaatgttcttgagatgaaactgacaacttgttgtcataa 8354464  T

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Target: chr7; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 97 - 200
Target Start/End: Original strand, 8410644 - 8410743
Alignment:
Q  97 taataagtaaaaaccagccaaaactagcaaagctattgagtagccaagaaatagatagatacttttcccttgtaattgtgaattcctcggaaattgagaa 196  Q
    |||||||||||||||||||||||||||||||| ||| |||||||||||||    |||||||| |||| |||||||||||||||||||||||| | |||||    
T  8410644 taataagtaaaaaccagccaaaactagcaaagttatagagtagccaagaa----atagatacctttctcttgtaattgtgaattcctcggaactcgagaa 8410739  T

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Target: chr7; HSP #4
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 88 - 148
Target Start/End: Original strand, 8348906 - 8348966
Alignment:
Q  88 agtaggcaataataagtaaaaaccagccaaaactagcaaagctattgagtagccaagaaat 148  Q
    ||||||||||||||||||||||||| ||||||||||||||||| | || ||||||||||||    
T  8348906 agtaggcaataataagtaaaaaccatccaaaactagcaaagctgtagactagccaagaaat 8348966  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 77
Target Start/End: Complemental strand, 23944158 - 23944090
Alignment:
Q  9 gagatgaatatcacatgttgaatgaatgatatgtagaagtttaatgttcttgagatgaaactgacaact 77  Q
    |||||| | ||||||||||||||||| || | | |||||||| |||||||| |||||||| || |||||    
T  23944158 gagatggaaatcacatgttgaatgaaagagaagaagaagtttgatgttcttaagatgaaaatggcaact 23944090  T

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Target: chr6 (Bit Score: 47; Significance: 6e-18; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 18 - 88
Target Start/End: Original strand, 7556118 - 7556188
Alignment:
Q  18 atcacatgttgaatgaatgatatgtagaagtttaatgttcttgagatgaaactgacaacttgttgtcataa 88  Q
    |||||||||||||||||||||||| | || ||||||||||||||||||||| |||||||| | ||||||||    
T  7556118 atcacatgttgaatgaatgatatgaataaatttaatgttcttgagatgaaaatgacaactcgctgtcataa 7556188  T

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Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 14 - 68
Target Start/End: Complemental strand, 32047251 - 32047197
Alignment:
Q  14 gaatatcacatgttgaatgaatgatatgtagaagtttaatgttcttgagatgaaa 68  Q
    |||||||| ||||||||||||||| ||| |||||||| |||||||||||||||||    
T  32047251 gaatatcatatgttgaatgaatgagatgaagaagtttgatgttcttgagatgaaa 32047197  T

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Target: chr5 (Bit Score: 45; Significance: 9e-17; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 9 - 77
Target Start/End: Complemental strand, 41264455 - 41264387
Alignment:
Q  9 gagatgaatatcacatgttgaatgaatgatatgtagaagtttaatgttcttgagatgaaactgacaact 77  Q
    |||||||| |||||||||||||||||  ||||| | |||||||||||||||||||||||| ||||||||    
T  41264455 gagatgaagatcacatgttgaatgaacaatatgaaaaagtttaatgttcttgagatgaaaatgacaact 41264387  T

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Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 18 - 68
Target Start/End: Original strand, 2243318 - 2243368
Alignment:
Q  18 atcacatgttgaatgaatgatatgtagaagtttaatgttcttgagatgaaa 68  Q
    ||||||||||||||||| |||||| |||||||| |||||||||||||||||    
T  2243318 atcacatgttgaatgaaggatatgaagaagtttgatgttcttgagatgaaa 2243368  T

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Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 11 - 68
Target Start/End: Original strand, 22780339 - 22780396
Alignment:
Q  11 gatgaatatcacatgttgaatgaatgatatgtagaagtttaatgttcttgagatgaaa 68  Q
    |||||| ||||||||||||||||| |||||| ||||||||| |||| |||||||||||    
T  22780339 gatgaagatcacatgttgaatgaaggatatgaagaagtttattgtttttgagatgaaa 22780396  T

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Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 12 - 68
Target Start/End: Original strand, 7113610 - 7113666
Alignment:
Q  12 atgaatatcacatgttgaatgaatgatatgtagaagtttaatgttcttgagatgaaa 68  Q
    ||||| |||||| ||||||||||||| ||| ||||||||||| ||||||||||||||    
T  7113610 atgaaaatcacacgttgaatgaatgagatgaagaagtttaatattcttgagatgaaa 7113666  T

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Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 9 - 68
Target Start/End: Original strand, 7215461 - 7215520
Alignment:
Q  9 gagatgaatatcacatgttgaatgaatgatatgtagaagtttaatgttcttgagatgaaa 68  Q
    |||||||| |||||||||||||||||  ||||| | ||||||||||||||||| ||||||    
T  7215461 gagatgaagatcacatgttgaatgaagaatatgaaaaagtttaatgttcttgatatgaaa 7215520  T

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Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 8 - 77
Target Start/End: Complemental strand, 973194 - 973125
Alignment:
Q  8 tgagatgaatatcacatgttgaatgaatgatatgtagaagtttaatgttcttgagatgaaactgacaact 77  Q
    ||||||||| |||||||||||||| || || ||| |||| ||||||||| ||||||| ||| ||| ||||    
T  973194 tgagatgaagatcacatgttgaataaaggagatgaagaaatttaatgtttttgagataaaaatgataact 973125  T

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Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 32 - 77
Target Start/End: Complemental strand, 37077711 - 37077666
Alignment:
Q  32 gaatgatatgtagaagtttaatgttcttgagatgaaactgacaact 77  Q
    |||||| ||| |||||||||||||||||||||||||| ||| ||||    
T  37077711 gaatgagatgaagaagtttaatgttcttgagatgaaaatgataact 37077666  T

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Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 8 - 56
Target Start/End: Complemental strand, 40483764 - 40483716
Alignment:
Q  8 tgagatgaatatcacatgttgaatgaatgatatgtagaagtttaatgtt 56  Q
    ||||||||| |||||||||||||||| ||| ||| |||||||| |||||    
T  40483764 tgagatgaagatcacatgttgaatgagtgagatgaagaagtttgatgtt 40483716  T

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Target: chr1 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 13 - 68
Target Start/End: Complemental strand, 3232036 - 3231981
Alignment:
Q  13 tgaatatcacatgttgaatgaatgatatgtagaagtttaatgttcttgagatgaaa 68  Q
    ||||||||||||||||||||||||| ||| ||||||||  ||||||||||||||||    
T  3232036 tgaatatcacatgttgaatgaatgacatgaagaagtttgttgttcttgagatgaaa 3231981  T

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Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 9 - 88
Target Start/End: Complemental strand, 15321123 - 15321044
Alignment:
Q  9 gagatgaatatcacatgttgaatgaatgatatgtagaagtttaatgttcttgagatgaaactgacaacttgttgtcataa 88  Q
    |||||||| || |||||||||||||| |||||| | || ||||||||| |||||| |||| |||||||| ||||| ||||    
T  15321123 gagatgaagattacatgttgaatgaaggatatgaaaaaatttaatgtttttgagaagaaaatgacaactcgttgtaataa 15321044  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 21 - 68
Target Start/End: Complemental strand, 46081041 - 46080994
Alignment:
Q  21 acatgttgaatgaatgatatgtagaagtttaatgttcttgagatgaaa 68  Q
    ||||||||| |||| || ||| ||||||||||||||||||||||||||    
T  46081041 acatgttgagtgaaggagatgaagaagtttaatgttcttgagatgaaa 46080994  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 9 - 67
Target Start/End: Complemental strand, 3367864 - 3367806
Alignment:
Q  9 gagatgaatatcacatgttgaatgaatgatatgtagaagtttaatgttcttgagatgaa 67  Q
    |||||| | |||||||||||||||||||| ||| | || ||| ||||||||||||||||    
T  3367864 gagatggagatcacatgttgaatgaatgagatgaaaaaatttgatgttcttgagatgaa 3367806  T

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Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 68
Target Start/End: Complemental strand, 52432734 - 52432684
Alignment:
Q  18 atcacatgttgaatgaatgatatgtagaagtttaatgttcttgagatgaaa 68  Q
    ||||| |||| |||||| || ||| ||||||||||||||||||||||||||    
T  52432734 atcacttgttaaatgaaggagatgaagaagtttaatgttcttgagatgaaa 52432684  T

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Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 9 - 50
Target Start/End: Complemental strand, 12145049 - 12145008
Alignment:
Q  9 gagatgaatatcacatgttgaatgaatgatatgtagaagttt 50  Q
    |||||||| |||||||||||||||||||| ||| ||||||||    
T  12145049 gagatgaaaatcacatgttgaatgaatgagatgaagaagttt 12145008  T

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Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 61
Target Start/End: Complemental strand, 7104347 - 7104295
Alignment:
Q  9 gagatgaatatcacatgttgaatgaatgatatgtagaagtttaatgttcttga 61  Q
    ||||||||||| |||||||||||||| || ||| |||| |||||| |||||||    
T  7104347 gagatgaatattacatgttgaatgaaggagatgaagaaatttaatattcttga 7104295  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 9 - 68
Target Start/End: Original strand, 32166628 - 32166687
Alignment:
Q  9 gagatgaatatcacatgttgaatgaatgatatgtagaagtttaatgttcttgagatgaaa 68  Q
    |||||||| || ||||||||||| || || ||| |||||||| |||||||||||||||||    
T  32166628 gagatgaagattacatgttgaataaaggagatgaagaagtttgatgttcttgagatgaaa 32166687  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 61
Target Start/End: Complemental strand, 29969179 - 29969127
Alignment:
Q  9 gagatgaatatcacatgttgaatgaatgatatgtagaagtttaatgttcttga 61  Q
    |||||||||||||||||||||||||| |  | | |||||||| ||||||||||    
T  29969179 gagatgaatatcacatgttgaatgaaggggaagaagaagtttgatgttcttga 29969127  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 21 - 68
Target Start/End: Complemental strand, 54437707 - 54437660
Alignment:
Q  21 acatgttgaatgaatgatatgtagaagtttaatgttcttgagatgaaa 68  Q
    ||||||| |||||| |||||| |||||||||||||| |||||||||||    
T  54437707 acatgttaaatgaaggatatgaagaagtttaatgttattgagatgaaa 54437660  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 9 - 68
Target Start/End: Original strand, 38576930 - 38576989
Alignment:
Q  9 gagatgaatatcacatgttgaatgaatgatatgtagaagtttaatgttcttgagatgaaa 68  Q
    |||||| | ||||||||||||||||| || ||| |||| |||||||||||| ||||||||    
T  38576930 gagatggaaatcacatgttgaatgaaagagatgaagaactttaatgttctttagatgaaa 38576989  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 68
Target Start/End: Complemental strand, 16576321 - 16576271
Alignment:
Q  18 atcacatgttgaatgaatgatatgtagaagtttaatgttcttgagatgaaa 68  Q
    ||||||||||||||||| || ||| |||||||| |||||||||||| ||||    
T  16576321 atcacatgttgaatgaaggagatgaagaagtttgatgttcttgagaggaaa 16576271  T

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