View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3584_low_27 (Length: 249)
Name: NF3584_low_27
Description: NF3584
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3584_low_27 |
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Alignment Details
Target: chr7 (Bit Score: 227; Significance: 1e-125; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 22559638 - 22559400
Alignment:
| Q |
1 |
ctccctcaaatttaatacctaaagtatataaatattataagtagttcgaaaagatataaaatcggtcaatttagtctctgctattaagatgttagagact |
100 |
Q |
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| T |
22559638 |
ctccctcaaatttaatacctaaagtatataaatattataagtagttcgaaaagatataaaatcggtcaatttagtctctgctattaagatgttagagact |
22559539 |
T |
|
| Q |
101 |
atatcgacaaattttctcatattataatgattgaattgacggattttatatactgtaacgactacttacataactaaattgatagtttattcaaaattga |
200 |
Q |
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|||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
22559538 |
atattgacaaattttctcatattataatgattgaattgaccgattttatatactgtaacgactacttacataactaaattgatggtttattcaaaattga |
22559439 |
T |
|
| Q |
201 |
atcaaatctaatgtgatcttttcattgtgttttgcctat |
239 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||| |
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| T |
22559438 |
atcaaatctaatgtgatcttttcattgtgttttgcctat |
22559400 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 65 - 121
Target Start/End: Original strand, 34334668 - 34334724
Alignment:
| Q |
65 |
gtcaatttagtctctgctattaagatgttagagactatatcgacaaattttctcata |
121 |
Q |
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||||||||||| || ||||||||||||||||||||||| || |||||||||||| |
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| T |
34334668 |
gtcaatttagttaatgttattaagatgttagagactatattaactaattttctcata |
34334724 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 54 - 104
Target Start/End: Complemental strand, 37965864 - 37965814
Alignment:
| Q |
54 |
atataaaatcggtcaatttagtctctgctattaagatgttagagactatat |
104 |
Q |
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|||||||||| ||||||||||||| ||| ||||| |||||||||| ||||| |
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| T |
37965864 |
atataaaatctgtcaatttagtctatgcaattaatatgttagagagtatat |
37965814 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 60 - 101
Target Start/End: Original strand, 43284046 - 43284087
Alignment:
| Q |
60 |
aatcggtcaatttagtctctgctattaagatgttagagacta |
101 |
Q |
| |
|
|||| ||| |||||||| |||||||||||||||||||||||| |
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|
| T |
43284046 |
aatccgtcgatttagtccctgctattaagatgttagagacta |
43284087 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 54 - 98
Target Start/End: Complemental strand, 41811978 - 41811934
Alignment:
| Q |
54 |
atataaaatcggtcaatttagtctctgctattaagatgttagaga |
98 |
Q |
| |
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|||||||||| ||||||||| ||||||||| ||||||||||||| |
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|
| T |
41811978 |
atataaaatccatcaatttagactctgctatcaagatgttagaga |
41811934 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 9 - 94
Target Start/End: Complemental strand, 10242769 - 10242686
Alignment:
| Q |
9 |
aatttaatacctaaagtatataaatattataagtagttcgaaaagatataaaatcggtcaatttagtctctgctattaagatgtta |
94 |
Q |
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||||||| | ||||||||||||||||| |||| ||||| ||| ||||||||| ||||||||||||| | |||||||||||||| |
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| T |
10242769 |
aatttaaaatctaaagtatataaatataataa-tagttt-aaagtatataaaattcgtcaatttagtctatactattaagatgtta |
10242686 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 9 - 101
Target Start/End: Complemental strand, 54254113 - 54254020
Alignment:
| Q |
9 |
aatttaatacctaaagtatataaatattataagtagt-tcgaaaagatataaaatcggtcaatttagtctctgctattaagatgttagagacta |
101 |
Q |
| |
|
|||||| | |||||||| ||||||||| ||||||||| || || | || | ||||| |||||||| ||| || ||||||||||||||| ||||| |
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| T |
54254113 |
aatttagtccctaaagtgtataaatataataagtagtctctaacacatttgaaatccgtcaatttcgtcccttctattaagatgttagggacta |
54254020 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 65 - 101
Target Start/End: Complemental strand, 51874859 - 51874823
Alignment:
| Q |
65 |
gtcaatttagtctctgctattaagatgttagagacta |
101 |
Q |
| |
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||||||||| |||||| |||||||||||||||||||| |
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|
| T |
51874859 |
gtcaatttaatctctgttattaagatgttagagacta |
51874823 |
T |
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