View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3584_low_28 (Length: 249)

Name: NF3584_low_28
Description: NF3584
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3584_low_28
NF3584_low_28
[»] chr7 (2 HSPs)
chr7 (1-244)||(38212973-38213217)
chr7 (55-150)||(31264737-31264831)
[»] chr1 (2 HSPs)
chr1 (47-193)||(38744814-38744960)
chr1 (90-149)||(5227604-5227662)
[»] chr4 (3 HSPs)
chr4 (90-193)||(42690249-42690352)
chr4 (96-193)||(42690470-42690565)
chr4 (103-170)||(43563059-43563124)
[»] chr5 (1 HSPs)
chr5 (47-150)||(39074399-39074502)
[»] chr3 (1 HSPs)
chr3 (90-152)||(46177569-46177631)
[»] chr2 (1 HSPs)
chr2 (90-150)||(32988985-32989045)


Alignment Details
Target: chr7 (Bit Score: 185; Significance: 1e-100; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 1 - 244
Target Start/End: Original strand, 38212973 - 38213217
Alignment:
Q  1 tatgagagaaa-aatattgctatgttatacctccaacatgctacaatgtgttttgaggtatcgtttattttggatataagttcttcatagttttgtcttt 99  Q
    ||||||||||| ||||||| ||||||| ||||| | |||||||||||| ||||||||||||||| ||||||||||||||||| |||||| |||| |||||    
T  38212973 tatgagagaaagaatattgttatgttacacctctagcatgctacaatgcgttttgaggtatcgtctattttggatataagtttttcataattttctcttt 38213072  T
Q  100 tataaaaggtgtctcgttaaattgaggagtgtgaatgttgtatataaactattatttgcttcgattttcaaacaatgtgggattttaaggtgtagctgaa 199  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||    
T  38213073 tataaaaggtgtctcgttaaattgaggagtgtgaatgttgtatataaactattatttgcttcgattttcaagcaatgtgggattttaaggtgtacctgaa 38213172  T
Q  200 caattgtcccctaaagggtaagggagagtctgcatctctgctcct 244  Q
    |||||| |||||||||||||||||||||||||||| |||||||||    
T  38213173 caattgccccctaaagggtaagggagagtctgcatgtctgctcct 38213217  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 55 - 150
Target Start/End: Complemental strand, 31264831 - 31264737
Alignment:
Q  55 aggtatcgtttattttggatataagttcttcatagttttgtcttttataaaaggtgtctcgttaaattgaggagtgtgaatgttgtatataaacta 150  Q
    |||||| ||||| |||||   ||||| |||||  ||||| |||||||||||| ||||||| ||   |||||||||||||||||| |||||||||||    
T  31264831 aggtattgtttactttgggcgtaagtccttcacggttttctcttttataaaaagtgtctcattgggttgaggagtgtgaatgtt-tatataaacta 31264737  T

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Target: chr1 (Bit Score: 51; Significance: 2e-20; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 47 - 193
Target Start/End: Original strand, 38744814 - 38744960
Alignment:
Q  47 gtgttttgaggtatcgtttattttggatataagttcttcatagttttgtcttttataaaaggtgtctcgttaaattgaggagtgtgaatgttgtatataa 146  Q
    |||||||||||||| |  | |||||||| ||||||  | |  ||||||||||||| |||||| || |||||  ||||| |||||||| |||| |||||||    
T  38744814 gtgttttgaggtattggatgttttggatgtaagtttattacggttttgtcttttacaaaaggcgtttcgtttgattgaagagtgtgagtgttatatataa 38744913  T
Q  147 actattatttgcttcgattttcaaacaatgtgggattttaaggtgta 193  Q
    ||||| |||||| ||||||| ||| ||||||| || |||||||||||    
T  38744914 actataatttgcctcgatttccaagcaatgtgagactttaaggtgta 38744960  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 90 - 149
Target Start/End: Complemental strand, 5227662 - 5227604
Alignment:
Q  90 ttttgtcttttataaaaggtgtctcgttaaattgaggagtgtgaatgttgtatataaact 149  Q
    ||||||| ||||||||| ||||||||||||| |||| |||||| ||||||| ||||||||    
T  5227662 ttttgtcatttataaaatgtgtctcgttaaa-tgagaagtgtggatgttgtttataaact 5227604  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 90 - 193
Target Start/End: Original strand, 42690249 - 42690352
Alignment:
Q  90 ttttgtcttttataaaaggtgtctcgttaaattgaggagtgtgaatgttgtatataaactattatttgcttcgattttcaaacaatgtgggattttaagg 189  Q
    ||||||| |||||||||  | |||||||  |||||||||||||| || |||||||||||||   || |||||||||  ||||||||||  | ||||||||    
T  42690249 ttttgtcatttataaaatatatctcgttggattgaggagtgtgattgctgtatataaactacccttagcttcgattcacaaacaatgtaaggttttaagg 42690348  T
Q  190 tgta 193  Q
    ||||    
T  42690349 tgta 42690352  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 96 - 193
Target Start/End: Complemental strand, 42690565 - 42690470
Alignment:
Q  96 cttttataaaaggtgtctcgttaaattgaggagtgtgaatgttgtatataaactattatttgcttcgattttcaaacaatgtgggattttaaggtgta 193  Q
    |||||||||||||||||| |||| ||||| ||||||| |||||||||||  | || ||||  | |||| | |||||||||||| || |||||||||||    
T  42690565 cttttataaaaggtgtcttgttagattgatgagtgtggatgttgtatat--attactattgacatcgactgtcaaacaatgtgagactttaaggtgta 42690470  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 103 - 170
Target Start/End: Original strand, 43563059 - 43563124
Alignment:
Q  103 aaaaggtgtctcgttaaattgaggagtgtgaatgttgtatataaactattatttgcttcgattttcaa 170  Q
    ||||| |||||| ||||||||||||||| | ||  ||| |||||||||||||| ||||||||| ||||    
T  43563059 aaaagatgtctcattaaattgaggagtgagtat--tgtttataaactattattagcttcgattctcaa 43563124  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 47 - 150
Target Start/End: Complemental strand, 39074502 - 39074399
Alignment:
Q  47 gtgttttgaggtatcgtttattttggatataagttcttcatagttttgtcttttataaaaggtgtctcgttaaattgaggagtgtgaatgttgtatataa 146  Q
    |||||||||||||| | ||  ||||| ||||||   || || |||||||| |||||||||   ||||  |||||||||||||||||| |||| |||||||    
T  39074502 gtgttttgaggtattgcttgctttgggtataagccttttatggttttgtcatttataaaatacgtcttcttaaattgaggagtgtgagtgttatatataa 39074403  T
Q  147 acta 150  Q
    ||||    
T  39074402 acta 39074399  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 90 - 152
Target Start/End: Original strand, 46177569 - 46177631
Alignment:
Q  90 ttttgtcttttataaaaggtgtctcgttaaattgaggagtgtgaatgttgtatataaactatt 152  Q
    ||||||||||| ||||| |  | |||||  |||||||||||||||| ||||||||||||||||    
T  46177569 ttttgtcttttgtaaaaagaatttcgttggattgaggagtgtgaatattgtatataaactatt 46177631  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 90 - 150
Target Start/End: Original strand, 32988985 - 32989045
Alignment:
Q  90 ttttgtcttttataaaaggtgtctcgttaaattgaggagtgtgaatgttgtatataaacta 150  Q
    ||||||| ||||||||||||||||||||   || | ||||| || ||||||||||||||||    
T  32988985 ttttgtcctttataaaaggtgtctcgttggtttaaagagtgcgagtgttgtatataaacta 32989045  T

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