View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3584_low_5 (Length: 334)
Name: NF3584_low_5
Description: NF3584
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3584_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 271; Significance: 1e-151; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 1 - 321
Target Start/End: Complemental strand, 3642040 - 3641708
Alignment:
| Q |
1 |
tgtaagagaatctaattgcaaatggacataacttacatcacaaatccaaatgtgaatatctctatgctgaaaaatgcctataatttactttatctatgtg |
100 |
Q |
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| T |
3642040 |
tgtaagagaatctaattgcaaatggacataacttacatcacaaatccaaatgtgaatatctctatgctgaaaaatgcctataatttactttatctatgtg |
3641941 |
T |
|
| Q |
101 |
atttaatgatatttgtatagattccttctagccaccaggtaacatcagtgaaaatat---atgaagtttgatccggtgacatcgtgaatttgattcttgc |
197 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
3641940 |
atttaatgttatttgtatagattccttctagccaccaggtaacatcagtgaaaatatatgatgaagtttgatccggtgacatcgtgaatttgattcttgt |
3641841 |
T |
|
| Q |
198 |
aacaacacgttggccaaattttgacttcatttataa---------cttttgatacgatcctttctctctgtaaacactatatggttagtctcttaaaatt |
288 |
Q |
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||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
3641840 |
aacaacatgttggccaaattttgacttcatttataacttttgaaccttttgatacgatcctttctctctgtaaacattatatggttagtctcttaaaatt |
3641741 |
T |
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| Q |
289 |
cattcagagtctgctgaattcagcaactgccct |
321 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
3641740 |
cattcagagtctgctgaattcagcaactgccct |
3641708 |
T |
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