View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3585_high_1 (Length: 500)
Name: NF3585_high_1
Description: NF3585
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3585_high_1 |
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Alignment Details
Target: chr3 (Bit Score: 472; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 472; E-Value: 0
Query Start/End: Original strand, 6 - 485
Target Start/End: Original strand, 37750127 - 37750606
Alignment:
| Q |
6 |
aggagcacagatgagcttgttgatggtcctaatgctgactatatgagctctgctgttcttgatagatgggaagaaagattgcatgacattttcaatggat |
105 |
Q |
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| T |
37750127 |
aggaggacagatgagcttgttgatggtcctaatgctgactatatgagctctgctgttcttgatagatgggaagaaagattgcatgacattttcaatggat |
37750226 |
T |
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| Q |
106 |
gtccctatgatatgcttgatgctgctcttacagatacaatctccaagtttcccttggatattaaggtaacagctaaaattccttaactatcaattctcat |
205 |
Q |
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| T |
37750227 |
gtccctatgatatgcttgatgctgctcttacagatacaatctccaagtttcccttggatattaaggtaacagctaaaattccttaactatcaattctcat |
37750326 |
T |
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| Q |
206 |
gctttcagaatcagattaatatttaacactactagaaaaattgaatcagcgatgaaaaatcacgaatatgttctggttgtatctttaagtgttttttctg |
305 |
Q |
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| T |
37750327 |
gctttcagaatcagattaatatttaacactactagaaaaattgaatcagcgatgaaaaatcacgaatatgttctggttgtatcttgaagtgttttttctg |
37750426 |
T |
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| Q |
306 |
ttataatttttgtctgtaattcaactaatgagataatgcttgtgttttattgcagccttttagggacatgatagaaggtatgagaatggatacgaggaaa |
405 |
Q |
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| T |
37750427 |
ttataatttttgtctgtaattcaactaatgagataatgcttgtgttttattgcagccttttagggacatgatagaaggtatgagaatggatacgaggaaa |
37750526 |
T |
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| Q |
406 |
tcacgatacaaaaatttcgaagaattatatctttactgctactatgtggcgggaactgttggtttgatgagtgttccagt |
485 |
Q |
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| T |
37750527 |
tcacgatacaaaaatttcgaagaattatatctttactgctactatgtggcgggaactgttggtttgatgagtgttccagt |
37750606 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 6 - 221
Target Start/End: Original strand, 37755926 - 37756140
Alignment:
| Q |
6 |
aggagcacagatgagcttgttgatggtcctaatgctgactatatgagctctgctgttcttgatagatgggaagaaagattgcatgacattttcaatggat |
105 |
Q |
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||||| ||| ||||| |||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||| |
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| T |
37755926 |
aggaggacatatgagtttgttgatggtcctaatgctgactgtatgagctctgctgttcttgatagacgggaagaaagattgcatgacattttcaacggac |
37756025 |
T |
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| Q |
106 |
gtccctatgatatgcttgatgctgctcttacagatacaatctccaagtttcccttggatattaaggtaacagctaaaattccttaactatcaattctcat |
205 |
Q |
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| T |
37756026 |
atcctaatgatatgcttgatgcttctcttactgatacaatctcttggtttccgttggatattaa-gtaacaactaaaactggttagtgatcatttctcat |
37756124 |
T |
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| Q |
206 |
gctttcagaatcagat |
221 |
Q |
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| T |
37756125 |
actttcagaatcagat |
37756140 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 344 - 405
Target Start/End: Original strand, 37756251 - 37756312
Alignment:
| Q |
344 |
cttgtgttttattgcagccttttagggacatgatagaaggtatgagaatggatacgaggaaa |
405 |
Q |
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| T |
37756251 |
cttgtgtttgattgcagtctttctgggacatgatagaaggtgtgagaatggatacgaggaaa |
37756312 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 373 - 482
Target Start/End: Complemental strand, 32687658 - 32687549
Alignment:
| Q |
373 |
atgatagaaggtatgagaatggatacgaggaaatcacgatacaaaaatttcgaagaattatatctttactgctactatgtggcgggaactgttggtttga |
472 |
Q |
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| T |
32687658 |
atgatagaaggaatgagaatggatcttaagaagtcaagatacaaaagctttgatgaactatatctctactgttactatgttgctggaactgttggtttaa |
32687559 |
T |
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| Q |
473 |
tgagtgttcc |
482 |
Q |
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| T |
32687558 |
tgagtgttcc |
32687549 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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