View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3585_high_2 (Length: 352)
Name: NF3585_high_2
Description: NF3585
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3585_high_2 |
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Alignment Details
Target: chr5 (Bit Score: 261; Significance: 1e-145; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 59 - 327
Target Start/End: Original strand, 7194283 - 7194551
Alignment:
| Q |
59 |
ctctcaaacaaggatccttcataaaatggtatgttttgcaaatattatattgagattttaagaaaagattcatgagtaaaaagaaggcttttctcctgca |
158 |
Q |
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| T |
7194283 |
ctctcaaacaaggatccttcataaaatggtatgttttgcaaatattatattgagattttgagaaaagattcatgagtaaaaagaaggcttttctcctgca |
7194382 |
T |
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| Q |
159 |
ctcttataatttttcttataattttaagatataattaccataagttttgttggctttgctcctcaaggtacataacaaaacaaactcctacacatttagt |
258 |
Q |
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| T |
7194383 |
ctcttataatttttcttataattttaagatataattaccataagttttgttggctttgctcctcaaggtacataacaaaacaaactcctaaacatttagt |
7194482 |
T |
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| Q |
259 |
gtttctttgacttctagtactccagcaaagtacaaaacaagaagaataaatttatggtggggggtcgag |
327 |
Q |
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| T |
7194483 |
gtttctttgacttctagtactccagcaaagtacaaaacaagaagaataaatttatggtggggggtcgag |
7194551 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 119; E-Value: 9e-61
Query Start/End: Original strand, 5 - 240
Target Start/End: Original strand, 7182143 - 7182369
Alignment:
| Q |
5 |
tataacgaacaaaaaagcacacattgaaatttcattttttaaatagataactctctctcaaacaaggatccttcataaaatggtatgttttgcaaatatt |
104 |
Q |
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| T |
7182143 |
tataaccaacaaaaaagcacacattgaaacttcattttttaaatagataactttcac----acaaggatccttcgtaaaatgatatgttttgcaaatatt |
7182238 |
T |
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| Q |
105 |
atattgagattttaagaaaagattcatgagtaaaaagaaggcttttctcctgcactcttataatttttcttataattttaagatataattaccataagtt |
204 |
Q |
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| T |
7182239 |
atatcgagattttgagaaaagatt-----gtaaaatgaaggattttctcatgcactctcataatttttcttataactctaagatatagttagcataagtt |
7182333 |
T |
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| Q |
205 |
ttgttggctttgctcctcaaggtacataacaaaaca |
240 |
Q |
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| T |
7182334 |
ttgttggctatgctgctcaagatacatgacaaaaca |
7182369 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 205 - 245
Target Start/End: Original strand, 7182370 - 7182410
Alignment:
| Q |
205 |
ttgttggctttgctcctcaaggtacataacaaaacaaactc |
245 |
Q |
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| T |
7182370 |
ttgttggctatgctcctcaaggtacataactaaacaaactc |
7182410 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 178 - 236
Target Start/End: Complemental strand, 10650732 - 10650674
Alignment:
| Q |
178 |
aattttaagatataattaccataagttttgttggctttgctcctcaaggtacataacaa |
236 |
Q |
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| T |
10650732 |
aattttaagatatgcttagcataacttttcttgactatgctcctcaaggtacataacaa |
10650674 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 66 - 110
Target Start/End: Complemental strand, 10650848 - 10650804
Alignment:
| Q |
66 |
acaaggatccttcataaaatggtatgttttgcaaatattatattg |
110 |
Q |
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| T |
10650848 |
acaatgatctttcagaaaatgatatgttttgcaaatattatattg |
10650804 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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