View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3585_low_4 (Length: 302)
Name: NF3585_low_4
Description: NF3585
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3585_low_4 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 257; Significance: 1e-143; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 1 - 302
Target Start/End: Complemental strand, 37416864 - 37416563
Alignment:
| Q |
1 |
catgctaaagattccatcttggtgggtataactgaatttgaaaaatgccttgtggacattggattgtactttcaaaattggttatgcagagacaataaag |
100 |
Q |
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| T |
37416864 |
catgctaaagattccatcttggtgggtataactgaatttgaaaaatgccttgtggacattggattgtactttcaaaattggttatgtagagacaataaag |
37416765 |
T |
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| Q |
101 |
ctggttgtttctgcacttgcttccattctatagatgctcttcacacaccatttgcaaatttattagctgactcatgacatgctaaaacacttgggaacat |
200 |
Q |
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| T |
37416764 |
ttggttgtttctacacttgcttccattctatagatgctcttcacacaccatttgcaaatttattagctgactcatgacatgctagaacacttgggaacat |
37416665 |
T |
|
| Q |
201 |
tggaatatcagtaaatgcttgttactcttgcacattcatgtcagaagatgcttttagcattcttaaagaactgnnnnnnntactagtttctatgatgaca |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||| |||| |
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| T |
37416664 |
tggaatatcagtaaatgcttgttactcttgcacattcatgtcagaagatgcctttagcattcttaaagaactgaaaaaaatactagtttctatgacgaca |
37416565 |
T |
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| Q |
301 |
cg |
302 |
Q |
| |
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|| |
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| T |
37416564 |
cg |
37416563 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 1 - 302
Target Start/End: Complemental strand, 37424396 - 37424095
Alignment:
| Q |
1 |
catgctaaagattccatcttggtgggtataactgaatttgaaaaatgccttgtggacattggattgtactttcaaaattggttatgcagagacaataaag |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
37424396 |
catgctaaagattccatcttggtgggtataactgaatttgaaaaatgccttgtggacattggattgtactttcaaaattggttatgtagagacaataaag |
37424297 |
T |
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| Q |
101 |
ctggttgtttctgcacttgcttccattctatagatgctcttcacacaccatttgcaaatttattagctgactcatgacatgctaaaacacttgggaacat |
200 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
37424296 |
ttggttgtttctacacttgcttccattctatagatgctcttcacacaccatttgcaaatttattagctgactcatgacatgctagaacacttgggaacat |
37424197 |
T |
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| Q |
201 |
tggaatatcagtaaatgcttgttactcttgcacattcatgtcagaagatgcttttagcattcttaaagaactgnnnnnnntactagtttctatgatgaca |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||| |||| |
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| T |
37424196 |
tggaatatcagtaaatgcttgttactcttgcacattcatgtcagaagatgcctttagcattcttaaagaactgaaaaaaatactagtttctatgacgaca |
37424097 |
T |
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| Q |
301 |
cg |
302 |
Q |
| |
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|| |
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| T |
37424096 |
cg |
37424095 |
T |
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