View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3585_low_5 (Length: 277)
Name: NF3585_low_5
Description: NF3585
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3585_low_5 |
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Alignment Details
Target: chr7 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 260
Target Start/End: Complemental strand, 40822314 - 40822057
Alignment:
| Q |
1 |
tagactctccaaattgtagctttcatgttttcgcgcatttgaaggcttagacgtatatccaaacagacacttagatatttgaaagctaaacgaccattct |
100 |
Q |
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| T |
40822314 |
tagactctccaaattgtagctttcatgttttcgcgcatttgaaggcttagacgtatatccaaacagacacttggatatttgaaagctaaacgaccattct |
40822215 |
T |
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| Q |
101 |
ccacaagattcttattttgaaaaatctgcagctttagttgcagttctacttgagagattcctgtcttacagcaagggaaccccatctctcctttagctac |
200 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
40822214 |
ccacaagattctta-tttgaaaaatctgcagctttagttgcagttctacttgagagattcctgtcttacagcaagggaaccccatctctcc-ttagctac |
40822117 |
T |
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| Q |
201 |
attgcttatgcacgtgcctttaaaaatctctgtttgtgnnnnnnnaattaaaatgaatgt |
260 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
40822116 |
attgcttatgcacgtgcctttaaaaatctctgtttgtgtttttttaattaaaatgaatgt |
40822057 |
T |
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