View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3586_high_10 (Length: 365)
Name: NF3586_high_10
Description: NF3586
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3586_high_10 |
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Alignment Details
Target: chr4 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 29 - 263
Target Start/End: Original strand, 44318213 - 44318447
Alignment:
| Q |
29 |
attcaacaacccctccaacacaaattcggacccgcagatttccaaattctcagagttgtaggacaaggtgcctttggcaaagtcttcatggtcagnnnnn |
128 |
Q |
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| T |
44318213 |
attcaacaacccctccaacacaaattcggacccgcagatttccaaattctcagagttgtaggacaaggtgcctttggcaaagtcttcatggtcagaaaaa |
44318312 |
T |
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| Q |
129 |
nnggtgcagattcaaattcaaattcttcaaacggaatattcgccatgaaggttatgagaaaagacaacatcattaagaaaaatcatgttgattatatgaa |
228 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44318313 |
aaggtggagattcaaattcaaattcttcaaacggaatattcgccatgaaggttatgagaaaagacaacatcattaagaaaaatcatgttgattatatgaa |
44318412 |
T |
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| Q |
229 |
agctgagagagatattcttactaaagttcttcatc |
263 |
Q |
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| T |
44318413 |
agctgagagagatattcttactaaagttcttcatc |
44318447 |
T |
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