View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3586_high_12 (Length: 320)
Name: NF3586_high_12
Description: NF3586
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3586_high_12 |
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Alignment Details
Target: chr8 (Bit Score: 307; Significance: 1e-173; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 1 - 315
Target Start/End: Complemental strand, 20140737 - 20140423
Alignment:
| Q |
1 |
tttcgtgatgattgtttatacgtttgtgattggcctggttgtgttcatttggaagagaagagaaagtatagactttttcgaggtgtttttatgaatttca |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
20140737 |
tttcgtgatgattgtttatacgtttgtgattggcctggttgtgttcatttggaagagaagagaaagtatagactttttcgaggtatttttatgaatttca |
20140638 |
T |
|
| Q |
101 |
agaaaacacgtgtttggaagactgtgaatgatattagtaatcggaagaagattgatttggcttgtgctttttgttcttgtaatcatacttgggatcttca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20140637 |
agaaaacacgtgtttggaagactgtgaatgatattagtaatcggaagaagattgatttggcttgtgctttttgttcttgtaatcatacttgggatcttca |
20140538 |
T |
|
| Q |
201 |
ctctgctttttgtttgaggagaggatttggttatcatgatgatggtgaacctgttgttagggcttatgtttgtgataatggtcatgtttctggtgcttgg |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
20140537 |
ctctgctttttgtttgaggagaggatttggttatcatgatgatggtgaacctgttgttagagcttatgtttgtgataatggtcatgtttctggtgcttgg |
20140438 |
T |
|
| Q |
301 |
actgatatgcctatg |
315 |
Q |
| |
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||||||||||||||| |
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| T |
20140437 |
actgatatgcctatg |
20140423 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 307; Significance: 1e-173; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 1 - 315
Target Start/End: Complemental strand, 44318152 - 44317838
Alignment:
| Q |
1 |
tttcgtgatgattgtttatacgtttgtgattggcctggttgtgttcatttggaagagaagagaaagtatagactttttcgaggtgtttttatgaatttca |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
44318152 |
tttcgtgatgattgtttatacgtttgtgattggcctggttgtgttcatttggaagagaagagaaagtatagactttttcgaggtatttttatgaatttca |
44318053 |
T |
|
| Q |
101 |
agaaaacacgtgtttggaagactgtgaatgatattagtaatcggaagaagattgatttggcttgtgctttttgttcttgtaatcatacttgggatcttca |
200 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44318052 |
agaaaacacgtgtttggaagactgtgaatgatattagtaatcggaagaagattgatttggcttgtgctttttgttcttgtaatcatacttgggatcttca |
44317953 |
T |
|
| Q |
201 |
ctctgctttttgtttgaggagaggatttggttatcatgatgatggtgaacctgttgttagggcttatgtttgtgataatggtcatgtttctggtgcttgg |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
44317952 |
ctctgctttttgtttgaggagaggatttggttatcatgatgatggtgaacctgttgttagagcttatgtttgtgataatggtcatgtttctggtgcttgg |
44317853 |
T |
|
| Q |
301 |
actgatatgcctatg |
315 |
Q |
| |
|
||||||||||||||| |
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|
| T |
44317852 |
actgatatgcctatg |
44317838 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 235 - 315
Target Start/End: Complemental strand, 29632351 - 29632271
Alignment:
| Q |
235 |
catgatgatggtgaacctgttgttagggcttatgtttgtgataatggtcatgtttctggtgcttggactgatatgcctatg |
315 |
Q |
| |
|
||||||||| |||||||||||||| | ||||||||||||| |||||||||||||||||||||||||||||| | |||||| |
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| T |
29632351 |
catgatgatcgtgaacctgttgtttgtacttatgtttgtgacaatggtcatgtttctggtgcttggactgatttacctatg |
29632271 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 235 - 315
Target Start/End: Complemental strand, 16320450 - 16320370
Alignment:
| Q |
235 |
catgatgatggtgaacctgttgttagggcttatgtttgtgataatggtcatgtttctggtgcttggactgatatgcctatg |
315 |
Q |
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||||||||||||||||||| |||| | |||||||||| |||||||| || |||||||||| |||||||||| ||||||| |
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| T |
16320450 |
catgatgatggtgaacctgatgtttgtgcttatgtttctgataatgatcgagtttctggtgattggactgatgagcctatg |
16320370 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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