View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3586_high_17 (Length: 263)

Name: NF3586_high_17
Description: NF3586
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3586_high_17
NF3586_high_17
[»] chr2 (4 HSPs)
chr2 (9-263)||(27100192-27100445)
chr2 (37-261)||(27077896-27078120)
chr2 (81-263)||(26987175-26987355)
chr2 (57-142)||(27026844-27026928)
[»] chr7 (2 HSPs)
chr7 (49-263)||(30232242-30232456)
chr7 (58-263)||(30229527-30229722)
[»] chr6 (1 HSPs)
chr6 (81-263)||(34689282-34689462)


Alignment Details
Target: chr2 (Bit Score: 179; Significance: 1e-96; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 9 - 263
Target Start/End: Original strand, 27100192 - 27100445
Alignment:
Q  9 agcataggctgcagaaatgaaaaacttaaaaagagaatttaggcagataaactaacagaaattatcacataatttcttaataatgttttggtttacttgc 108  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||    
T  27100192 agcataggatgcagaaatgaaaaacttaaaaagagaatttaggcagataaactaacagaaattatcacataatttcttaaaaatgttttggtttgcttgc 27100291  T
Q  109 tctaaaggagaaaactgtgtatgaataaaattttaaaaatatacatgcacgtgtggtgggataaaaccttgttcctagcaaagaaaatgaaaaaacaact 208  Q
     ||||||||| ||||||| ||||||||||||||| ||||| ||||||||| ||||| ||||| ||||||||||||||||||||||||||||||| |||||    
T  27100292 gctaaaggag-aaactgtatatgaataaaattttgaaaatttacatgcacatgtggcgggattaaaccttgttcctagcaaagaaaatgaaaaagcaact 27100390  T
Q  209 aaaatgatcaaaattacctagttgttgttccatggttccttatgaagtagacgcc 263  Q
    |||| |||| ||| ||||||||| |||||||| |||||||| |||||||||||||    
T  27100391 aaaacgatcgaaagtacctagtttttgttccacggttccttctgaagtagacgcc 27100445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 37 - 261
Target Start/End: Original strand, 27077896 - 27078120
Alignment:
Q  37 aaaagagaatttaggcagataaactaacagaaattatcacataatttcttaataatgttttg----gtttacttgctctaaaggagaaaactgtgtatga 132  Q
    ||||||| ||| ||||||||||||||||||| ||| ||||||  |||| ||| |||||||||    ||||||||||||||||||||  |||||||  |||    
T  27077896 aaaagagcattaaggcagataaactaacagagattttcacatcgtttcctaaaaatgttttggtttgtttacttgctctaaaggag--aactgtg--tga 27077991  T
Q  133 ataaaattttaaaaatatacatgcacgtgtggtgggataaaaccttgttcctagcaaagaaaatgaaa-aaacaactaaaatgatcaaaattacctagtt 231  Q
    ||||| ||||   ||| |||||| || ||  | |||||  || || |||||||||||||||||||||| ||||||| | || ||| ||| ||||||| ||    
T  27077992 ataaatttttggcaatttacatgtacctgatgcgggattgaatctcgttcctagcaaagaaaatgaaagaaacaaccacaacgat-aaagttacctaatt 27078090  T
Q  232 gttgttccatggttccttatgaagtagacg 261  Q
     |||||||  |||||||  |||||||||||    
T  27078091 tttgttccgcggttcctgctgaagtagacg 27078120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 81 - 263
Target Start/End: Complemental strand, 26987355 - 26987175
Alignment:
Q  81 tttcttaataatgttttggtttacttgctctaaaggagaaaactgtgtatgaataaaattttaa-aaatatacatgcacgtgtggtgggataaaaccttg 179  Q
    |||||||| |||||||||||||||||||||| ||||||||| ||||||  ||||||| ||||   |||  || ||| || ||  |||||||  || ||||    
T  26987355 tttcttaaaaatgttttggtttacttgctcttaaggagaaa-ctgtgt--gaataaatttttggcaaagttatatgtacttgatgtgggattgaatcttg 26987259  T
Q  180 ttcctagcaaagaaaatgaaa-aaacaactaaaatgatcaaaattacctagttgttgttccatggttccttatgaagtagacgcc 263  Q
    ||||||||||||||||||||| ||||||||| ||  || ||||||||||| || |||||||  |||||||  |||||||||||||    
T  26987258 ttcctagcaaagaaaatgaaagaaacaactacaacaat-aaaattacctaatttttgttccgcggttcctgctgaagtagacgcc 26987175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 57 - 142
Target Start/End: Complemental strand, 27026928 - 27026844
Alignment:
Q  57 aaactaacagaaattatcacataatttcttaataatgttttggtttacttgctctaaaggagaaaactgtgtatgaataaaatttt 142  Q
    ||||||||| | | ||||||||  |||||| | |||| |||| ||||||||||||||||| | ||||||||||| |||||| ||||    
T  27026928 aaactaacaaagagtatcacatcctttcttcaaaatggtttgctttacttgctctaaaggtg-aaactgtgtataaataaattttt 27026844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 50; Significance: 1e-19; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 49 - 263
Target Start/End: Complemental strand, 30232456 - 30232242
Alignment:
Q  49 aggcagataaactaacagaaattatcacataatttcttaataatgttttggtttacttgctctaaaggagaaaactgtgtatgaataaaatttt---aaa 145  Q
    |||| ||||||||||||||  || ||||||  |||||||| ||||||||||||||||||||||||||||| ||||||||||  |||||| ||||   |||    
T  30232456 aggctgataaactaacagaggttttcacatcgtttcttaaaaatgttttggtttacttgctctaaaggag-aaactgtgta--aataaatttttggcaaa 30232360  T
Q  146 aatatacatgcacgtgtggtgggataaaaccttgttcctagcaaagaaaatgaaa-aaacaactaaaatgatcaaaattacctagttgttgttccatggt 244  Q
      || |  || || ||  |||||||  || ||||||||||||||||||||||||| ||||||| | ||  || ||||||||||| || |||||||  |||    
T  30232359 gttacatgtgtacctgatgtgggattgaatcttgttcctagcaaagaaaatgaaagaaacaaccacaacaat-aaaattacctaatttttgttccgcggt 30232261  T
Q  245 tccttatgaagtagacgcc 263  Q
    ||||  |||||||||||||    
T  30232260 tcctgctgaagtagacgcc 30232242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 58 - 263
Target Start/End: Complemental strand, 30229722 - 30229527
Alignment:
Q  58 aactaacagaaattatcacataatttcttaataatgttttggtttacttgctctaaaggagaaaactgtgtatgaataaaattttaaaaatatacatgca 157  Q
    |||||||||| |||||||||| ||||||||| |||| ||| |||||||||||||||||||| ||||||||  |||||||| ||||   ||| |||||| |    
T  30229722 aactaacagagattatcacattatttcttaaaaatggtttagtttacttgctctaaaggag-aaactgtg--tgaataaacttttggcaatttacatgta 30229626  T
Q  158 cgtgtggtgggataaaaccttgttcctagcaaagaaaatgaaa-aaacaactaaaatgatcaaaattacctagttgttgttccatggttccttatgaagt 256  Q
    |       | |||  || ||| ||||||| ||||||||||||| ||||||| | || ||| ||||||||||| || |||||||  ||||||| |||||||    
T  30229625 c-------gagattgaatctttttcctagaaaagaaaatgaaagaaacaaccacaacgat-aaaattacctaatttttgttccgcggttcctgatgaagt 30229534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 81 - 263
Target Start/End: Complemental strand, 34689462 - 34689282
Alignment:
Q  81 tttcttaataatgttttggtttacttgctctaaaggagaaaactgtgtatgaataaaattttaa-aaatatacatgcacgtgtggtgggataaaaccttg 179  Q
    |||||||| |||||||||||||||||||||| ||||||||| ||||||  ||||||| ||||   |||  || ||| || ||  |||||||  || ||||    
T  34689462 tttcttaaaaatgttttggtttacttgctcttaaggagaaa-ctgtgt--gaataaatttttggcaaagttagatgtacttgatgtgggatcgaatcttg 34689366  T
Q  180 ttcctagcaaagaaaatgaaa-aaacaactaaaatgatcaaaattacctagttgttgttccatggttccttatgaagtagacgcc 263  Q
    ||||||||||||||||||||| ||||||| | ||  || ||||||||||| || |||||||  |||||||  |||||||||||||    
T  34689365 ttcctagcaaagaaaatgaaagaaacaacaacaacaat-aaaattacctaatttttgttccgcggttcctgctgaagtagacgcc 34689282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University