View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3586_high_20 (Length: 253)
Name: NF3586_high_20
Description: NF3586
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3586_high_20 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 206; Significance: 1e-113; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 1 - 230
Target Start/End: Complemental strand, 52126610 - 52126381
Alignment:
| Q |
1 |
taaaacaaacttaggtttatctggataacaagattaatttctgcttaggtgtttacgtcgtaactaaaaaatctttgccccactctaaaaatatgcttgg |
100 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
52126610 |
taaaacaaacttaggtctatctggataacaagattaatttctgcttagatgtttacgtcgtaactaaaaaatctttgccccactctaaaaatatgtttgg |
52126511 |
T |
|
| Q |
101 |
gatcgaactgtcgtcctccctgttggattatgtaggagagtctcattggattgaattaatattgagtttatatttgtgggggagtcttattggatttaat |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
52126510 |
gatcgaactgtcgtcctccctgttggattatgtaggggagtctcattggattgaattaatattgagtttatatttgtgggggagtcttattgaatttaat |
52126411 |
T |
|
| Q |
201 |
taacattgagtttaagagtcgtaacctcaa |
230 |
Q |
| |
|
|||||||||||||||||||| ||||||||| |
|
|
| T |
52126410 |
taacattgagtttaagagtcataacctcaa |
52126381 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University