View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3586_high_3 (Length: 474)
Name: NF3586_high_3
Description: NF3586
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3586_high_3 |
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Alignment Details
Target: chr4 (Bit Score: 199; Significance: 1e-108; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 102 - 344
Target Start/End: Original strand, 50252686 - 50252929
Alignment:
| Q |
102 |
gattactataacatgtataattagcaaaatatattattgcatccaactgagctagaatatgatatgatacttcatgacaaattagttcttcctcnnnnnn |
201 |
Q |
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| T |
50252686 |
gattactataacatgtataattagcaaaatatattattgcatccaactgagctagaatatgatatgatacttcatgacaaattagttcttcctctttttt |
50252785 |
T |
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| Q |
202 |
ncaagttctcgaacaatcagtgttctcctattgtcagtttacaatcattgg-tttaacgcgtctgaaaattccagcttgtttatattatgaatggtgttg |
300 |
Q |
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| T |
50252786 |
ttaagttctcgaacaatcagtgttctcctattgtcagtttacaatcattgggtttaacgtgtctgaaaattccagcttgtttatattataaatggtgttg |
50252885 |
T |
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| Q |
301 |
gaatcctaagaaatggtttagtagatagaggtggggtctccata |
344 |
Q |
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| T |
50252886 |
gaatcctaagaaatgttttagtagatagaggtggggtctccata |
50252929 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 404 - 464
Target Start/End: Original strand, 50252974 - 50253034
Alignment:
| Q |
404 |
aggggcagtgagcagttgctgttgatataaccactgatgcagtccgagttttgagcctttg |
464 |
Q |
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| T |
50252974 |
aggggcagtgaacagttgctgctgctataaccactgatgcagtccgagttttgagcctttg |
50253034 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 18 - 56
Target Start/End: Original strand, 50252602 - 50252640
Alignment:
| Q |
18 |
tatttatcatacgagaattagacaaataggatgcatatc |
56 |
Q |
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| T |
50252602 |
tatttatcatacgagaattagacaaataggatgcatatc |
50252640 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 264 - 308
Target Start/End: Original strand, 25355690 - 25355734
Alignment:
| Q |
264 |
tgaaaattccagcttgtttatattatgaatggtgttggaatccta |
308 |
Q |
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| T |
25355690 |
tgaaaatttcaacttgtttgtactatgaatggtgttggaatccta |
25355734 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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