View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3586_high_6 (Length: 417)
Name: NF3586_high_6
Description: NF3586
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3586_high_6 |
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Alignment Details
Target: chr8 (Bit Score: 335; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 11 - 401
Target Start/End: Original strand, 21599767 - 21600155
Alignment:
| Q |
11 |
atgaattattttattgcttcggtatgtttacannnnnnngtctaatagattgaaaaatttgatatatacacacacacattccagctcttattttaatctt |
110 |
Q |
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| T |
21599767 |
atgaattattttattacttcggtatgtttacatttttttgtctaatagattgaaaaatttgatat--acacacacacattccagctcttattttaatctt |
21599864 |
T |
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| Q |
111 |
ttattgtgtagcgttactaagatgttttttggttgtttatgcgaggtaaaatcccgagggatgaattacttcatgatcttgagatcaaaaggacagtaag |
210 |
Q |
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| T |
21599865 |
ttattgtgtagcgttactaagatgtcttttggttgtttatgcgaggtaaaatcccgagggatgaattacttcatgatcttgagatcaaaaggacagtaag |
21599964 |
T |
|
| Q |
211 |
agctaaccagaaggcaatttgtttggctcagttagaagaagatacacttaaagaagcacaaaccaatccgaatcaaattttgattgaagtaccaaagatt |
310 |
Q |
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||||||| |||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
21599965 |
agctaactagaaggcaatttgtttggctcaattagaagaagatacacttaaggaagcacaaaccaatccgaatcaaattttgattgaagtaccagagatt |
21600064 |
T |
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| Q |
311 |
ggtgataatcctctggtaccacctccaaggtctgtcatggacaattgagttgggatttggataaggatcaccaacccgctcccttgaaaag |
401 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21600065 |
ggtgataatcctctggtaccacctccaaggtctgtcatggacaattgagttgggatttggataaggatcaccaacccgctcccttgaaaag |
21600155 |
T |
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