View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3586_low_1 (Length: 706)

Name: NF3586_low_1
Description: NF3586
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3586_low_1
NF3586_low_1
[»] chr4 (1 HSPs)
chr4 (1-691)||(25703588-25704275)


Alignment Details
Target: chr4 (Bit Score: 523; Significance: 0; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 523; E-Value: 0
Query Start/End: Original strand, 1 - 691
Target Start/End: Original strand, 25703588 - 25704275
Alignment:
Q  1 gctgtcgccgaagtatgttcggggactcgcggctgaggcgctgctgatacggccttgatcatcgtcgttgttggtggtgtgaaataacgagggttctgag 100  Q
    ||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  25703588 gctgtcgccgaagtatgttcggggactcgcggccgaggcactgctgatacggccttgatcatcgtcgttgttggtggtgtgaaataacgagggttcggag 25703687  T
Q  101 tgtagaaaagcaccaaattttggtctatgtattttattggtgctattgttattattggtgtttctctctactaacatggttacaccttttgtgtttgtca 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25703688 tgtagaaaagcaccaaattttggtctatgtattttattggtgctattgttattattggtgtttctctctactaacatggttacaccttttgtgtttgtca 25703787  T
Q  201 ttcaatgaaaaacgtaaacaaaactcaaaggtgcaaaggtttttcggagagaagataatattttgagggtnnnnnnnnnnnnnnnnnnnnnngttgaaga 300  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||                      ||||||||    
T  25703788 ttcaatgaaaaacgtaaacaaaactcaaaggtgcaaaggtttttcggagagaaggtaatattttgagggt----------ttgtgttgtgtggttgaaga 25703877  T
Q  301 gaatggaatgaaaaattaggagacaattttaggggatgtgtatatatatagtgagaggtggaggaatgggagagttattacagaggacacgtggtggggg 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||    
T  25703878 gaatggaatgaaaaattaggagacaattttaggggatgtgtatatatatagtgagaggtggaggaatggaagagttattagagaggacacgtggtggggg 25703977  T
Q  401 gaccgtgaaccggttgaaccggtaaattgttgaaactgaaaataga----------atatgaggcacgtaatgttttgagtagagtgcgtgnnnnnnngt 490  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||          ||||||| |||||||||||||||||||||||||||       ||    
T  25703978 gaccgtgaaccggttgaaccggt-aattgttgaaactgaaaatagaatagaatagtatatgagtcacgtaatgttttgagtagagtgcgtgtttttttgt 25704076  T
Q  491 attctcgaaagtgagaatgcgatttgtgaattgggattgttatgtttgacttctatgaattttctatatacacaatggagttaaggaaaggaaagggttg 590  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||| ||||||||||||||||||||||    
T  25704077 attctcgaaagtgagaatgcgatttgtgaattgggattgttatgtttgacttctatgaattttctatat--acaatgaagttaaggaaaggaaagggttg 25704174  T
Q  591 tgtaatgtatttgaccttctataacatcgtcaaaattgcacttttcagcttattcataacgatgttaattaacgcgccttgtaacttattgtggtcctat 690  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25704175 tgtaatgtatttgaccttctataacatcgtcaaaattgcacttttcagcttattcataacgatgttaattaacgcgccttgtaacttattgtggtcctat 25704274  T

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