View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3586_low_12 (Length: 333)

Name: NF3586_low_12
Description: NF3586
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3586_low_12
NF3586_low_12
[»] chr7 (2 HSPs)
chr7 (19-333)||(37417020-37417334)
chr7 (19-333)||(37424552-37424866)
[»] chr8 (1 HSPs)
chr8 (131-159)||(38358848-38358876)


Alignment Details
Target: chr7 (Bit Score: 303; Significance: 1e-170; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 19 - 333
Target Start/End: Complemental strand, 37417334 - 37417020
Alignment:
Q  19 ataccatagtgccaccgaaaccaatggatgttgctataacaattgaggatgggtcaaaagcctatgaagatatcactttgtcattcatttttctgttaaa 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37417334 ataccatagtgccaccgaaaccaatggatgttgctataacaattgaggatgggtcaaaagcctatgaagatatcactttgtcattcatttttctgttaaa 37417235  T
Q  119 tgatcattgatcagttctacaatttgaagggtattgtacttttaatcgctttgagttctacaatttgatcagggtgttgtactttgaaatatgagtggaa 218  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37417234 taatcattgatcagttctacaatttgaagggtattgtacttttaatcgctttgagttctacaatttgatcagggtgttgtactttgaaatatgagtggaa 37417135  T
Q  219 aatcttggttaaaagcgcttggacaatatcagggagcttttgatgaaaacggcaacttagttttttcgtatatttttactattggaaaaactgtgatgac 318  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  37417134 aatcttggttaaaagcgcttggacaatatcaggcagcttttgatgaaaacggcaacttagttttttcttatatttttactattggaaaaactgtgatgac 37417035  T
Q  319 aatttctgttggaaa 333  Q
    |||||||||||||||    
T  37417034 aatttctgttggaaa 37417020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 295; E-Value: 1e-166
Query Start/End: Original strand, 19 - 333
Target Start/End: Complemental strand, 37424866 - 37424552
Alignment:
Q  19 ataccatagtgccaccgaaaccaatggatgttgctataacaattgaggatgggtcaaaagcctatgaagatatcactttgtcattcatttttctgttaaa 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37424866 ataccatagtgccaccgaaaccaatggatgttgctataacaattgaggatgggtcaaaagcctatgaagatatcactttgtcattcatttttctgttaaa 37424767  T
Q  119 tgatcattgatcagttctacaatttgaagggtattgtacttttaatcgctttgagttctacaatttgatcagggtgttgtactttgaaatatgagtggaa 218  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  37424766 taatcattgatcagttctacaatttgaagggtattgtacttttaatcgctttgagttctacaatttgatcagggtgttgtactttgaaatatgagtgaaa 37424667  T
Q  219 aatcttggttaaaagcgcttggacaatatcagggagcttttgatgaaaacggcaacttagttttttcgtatatttttactattggaaaaactgtgatgac 318  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  37424666 aatcttggttaaaagcgcttggacaatatcaggcagcttttgatgaaaacggcaacttagttttttcatatatttttactattggaaaaactgtgatgac 37424567  T
Q  319 aatttctgttggaaa 333  Q
    || ||||||||||||    
T  37424566 aaattctgttggaaa 37424552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 131 - 159
Target Start/End: Complemental strand, 38358876 - 38358848
Alignment:
Q  131 agttctacaatttgaagggtattgtactt 159  Q
    |||||||||||||||||||||||||||||    
T  38358876 agttctacaatttgaagggtattgtactt 38358848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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