View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3586_low_2 (Length: 554)

Name: NF3586_low_2
Description: NF3586
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3586_low_2
NF3586_low_2
[»] chr7 (3 HSPs)
chr7 (139-539)||(27984509-27984901)
chr7 (9-103)||(27984344-27984442)
chr7 (265-315)||(2647592-2647642)
[»] scaffold0016 (1 HSPs)
scaffold0016 (197-264)||(102472-102540)
[»] chr1 (3 HSPs)
chr1 (220-256)||(48382467-48382503)
chr1 (199-264)||(35109515-35109581)
chr1 (197-249)||(8281369-8281422)
[»] chr5 (2 HSPs)
chr5 (265-315)||(2630383-2630433)
chr5 (265-315)||(11181727-11181777)
[»] chr4 (2 HSPs)
chr4 (197-258)||(873502-873564)
chr4 (220-264)||(39774283-39774327)
[»] chr8 (1 HSPs)
chr8 (218-258)||(8863608-8863648)
[»] chr6 (3 HSPs)
chr6 (25-101)||(99034-99109)
chr6 (467-531)||(1114747-1114811)
chr6 (197-252)||(30518118-30518174)


Alignment Details
Target: chr7 (Bit Score: 203; Significance: 1e-110; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 203; E-Value: 1e-110
Query Start/End: Original strand, 139 - 539
Target Start/End: Original strand, 27984509 - 27984901
Alignment:
Q  139 ctacacaccgttactgtttatccagttcggtccaataagacatactctctggagaaag-aactctctgattcactatgatagagtgacacaaataggtta 237  Q
    ||||||| || || |||||||||||||| |||||||||||||||||||  |||||||| ||||||||||| || ||||||||||||||||||||||||||    
T  27984509 ctacacatcgatattgtttatccagttcagtccaataagacatactctggggagaaagcaactctctgatccaatatgatagagtgacacaaataggtta 27984608  T
Q  238 caagaaattaacttacaagcttacaaatcacccacactcacgatgaatccttagagaaaacactaaatgaaggtttttagtttttacaaatatttctcat 337  Q
     ||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||| |||||||||||       |||||||||||||||||||||    
T  27984609 taagaaattaacttacaagcttacaagtcacccacactcacaatgaatccttagagaaaatactaaatgaag-------gtttttacaaatatttctcat 27984701  T
Q  338 cccaatnnnnnnnctctcatcaaagacactcagtcttaaagttccctccttt-agtttccgagtctccctcttgaagctccctnnnnnnnttgaaaaatt 436  Q
    |||||        |||||| ||||||||| ||||| |||||||| ||||||| | |||||||||||| |||||||||||||||        |||| ||||    
T  27984702 cccaa-gaaaaaactctcaccaaagacacccagtcctaaagttctctcctttgattttccgagtctctctcttgaagctccctaaaaaaa-tgaagaatt 27984799  T
Q  437 gaagtcttatatagtacccaaaatatcctgagaaatcgttccacgattggcacccatcatgccacgatttgttgttggtacaccaatacagtactaactt 536  Q
    |||| ||||||||| ||| ||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27984800 gaagccttatataggacctaaaatatcctgag-aatcgttcaacgattggcacccatcatgccacgatttgttgttggtacaccaatacagtactaactt 27984898  T

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Target: chr7; HSP #2
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 9 - 103
Target Start/End: Original strand, 27984344 - 27984442
Alignment:
Q  9 agcaaaggaattagtataatcaatgaataaagtagtcttaagcaactataac----aacaaacttatatctaagtgtgaagcaataccacaaacatatt 103  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||    |||||||||||||||||||||||||||||| ||||||||||||    
T  27984344 agcaaaggaattagtataatcaatgaataaagtagtcttaagcaacgataacaacaaacaaacttatatctaagtgtgaagcaataacacaaacatatt 27984442  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 265 - 315
Target Start/End: Complemental strand, 2647642 - 2647592
Alignment:
Q  265 tcacccacactcacgatgaatccttagagaaaacactaaatgaaggttttt 315  Q
    |||||||||||| | ||||||||| ||||||||||| |||||||| |||||    
T  2647642 tcacccacactctcaatgaatcctaagagaaaacacaaaatgaagtttttt 2647592  T

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Target: scaffold0016 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 197 - 264
Target Start/End: Complemental strand, 102540 - 102472
Alignment:
Q  197 aactctctgattcactatgata-gagtgacacaaataggttacaagaaattaacttacaagcttacaaa 264  Q
    ||||||||||| ||| |||||| |||||| ||||| |||||||||||||||| |||| ||||| |||||    
T  102540 aactctctgatccacaatgataagagtgatacaaagaggttacaagaaattatcttaaaagctcacaaa 102472  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000003; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 220 - 256
Target Start/End: Complemental strand, 48382503 - 48382467
Alignment:
Q  220 agtgacacaaataggttacaagaaattaacttacaag 256  Q
    ||||| |||||||||||||||||||||||||||||||    
T  48382503 agtgatacaaataggttacaagaaattaacttacaag 48382467  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 199 - 264
Target Start/End: Complemental strand, 35109581 - 35109515
Alignment:
Q  199 ctctctgattcactatgata-gagtgacacaaataggttacaagaaattaacttacaagcttacaaa 264  Q
    ||||||||| |||||||||| ||  || |||||||||||||||||||||| |||| ||||| |||||    
T  35109581 ctctctgatccactatgataagatagatacaaataggttacaagaaattagcttaaaagctcacaaa 35109515  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 197 - 249
Target Start/End: Original strand, 8281369 - 8281422
Alignment:
Q  197 aactctctgattcactatgata-gagtgacacaaataggttacaagaaattaac 249  Q
    ||||||||||| |||||||||| || ||| ||||||| ||||||||||||||||    
T  8281369 aactctctgatccactatgataagaatgatacaaatatgttacaagaaattaac 8281422  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 265 - 315
Target Start/End: Original strand, 2630383 - 2630433
Alignment:
Q  265 tcacccacactcacgatgaatccttagagaaaacactaaatgaaggttttt 315  Q
    |||||| ||||||| ||||||||| ||||||||||||||| |||| |||||    
T  2630383 tcaccctcactcacaatgaatcctaagagaaaacactaaaggaagcttttt 2630433  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 265 - 315
Target Start/End: Complemental strand, 11181777 - 11181727
Alignment:
Q  265 tcacccacactcacgatgaatccttagagaaaacactaaatgaaggttttt 315  Q
    |||||||||||||| ||||||||| ||||||||||| ||| |||| |||||    
T  11181777 tcacccacactcacaatgaatcctaagagaaaacacaaaaggaagcttttt 11181727  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 197 - 258
Target Start/End: Complemental strand, 873564 - 873502
Alignment:
Q  197 aactctctgattcactatgat-agagtgacacaaataggttacaagaaattaacttacaagct 258  Q
    ||||||| ||| ||||||||| ||| ||| || |||||||||||||||||||||||| |||||    
T  873564 aactctccgatccactatgattagaatgataccaataggttacaagaaattaacttaaaagct 873502  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 220 - 264
Target Start/End: Complemental strand, 39774327 - 39774283
Alignment:
Q  220 agtgacacaaataggttacaagaaattaacttacaagcttacaaa 264  Q
    ||||| |||||||||||||||||||||| |||| ||||| |||||    
T  39774327 agtgatacaaataggttacaagaaattagcttaaaagctcacaaa 39774283  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 218 - 258
Target Start/End: Complemental strand, 8863648 - 8863608
Alignment:
Q  218 agagtgacacaaataggttacaagaaattaacttacaagct 258  Q
    ||||||| ||||| ||||||||||||||||||||| |||||    
T  8863648 agagtgatacaaagaggttacaagaaattaacttaaaagct 8863608  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000008; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 25 - 101
Target Start/End: Original strand, 99034 - 99109
Alignment:
Q  25 taatcaatgaataaagtagtcttaagcaactataacaacaaacttatatctaagtgtgaagcaataccacaaacata 101  Q
    ||||||||||  |||||||||||||||||| | || ||||||| |||||| |||||| ||| || ||| ||||||||    
T  99034 taatcaatgagcaaagtagtcttaagcaacaacaa-aacaaacatatatccaagtgtaaagaaacaccgcaaacata 99109  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 467 - 531
Target Start/End: Complemental strand, 1114811 - 1114747
Alignment:
Q  467 agaaatcgttccacgattggcacccatcatgccacgatttgttgttggtacaccaatacagtact 531  Q
    ||||||||| ||| |||||||||||||| |||||||||||   ||| |||| |||||| ||||||    
T  1114811 agaaatcgtgccatgattggcacccatcgtgccacgatttacggttagtacgccaatagagtact 1114747  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 197 - 252
Target Start/End: Complemental strand, 30518174 - 30518118
Alignment:
Q  197 aactctctgattcactatgat-agagtgacacaaataggttacaagaaattaactta 252  Q
    ||||||||||| ||||||||| ||||||| ||||| |||||||| |||| |||||||    
T  30518174 aactctctgatccactatgataagagtgatacaaagaggttacatgaaactaactta 30518118  T

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