View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3586_low_24 (Length: 247)

Name: NF3586_low_24
Description: NF3586
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3586_low_24
NF3586_low_24
[»] chr3 (2 HSPs)
chr3 (12-230)||(15214229-15214447)
chr3 (12-230)||(15253448-15253666)
[»] chr7 (1 HSPs)
chr7 (12-230)||(45621930-45622148)
[»] chr1 (2 HSPs)
chr1 (12-230)||(20188258-20188476)
chr1 (55-226)||(51091612-51091788)
[»] chr8 (1 HSPs)
chr8 (12-230)||(22603451-22603668)


Alignment Details
Target: chr3 (Bit Score: 191; Significance: 1e-104; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 12 - 230
Target Start/End: Complemental strand, 15214447 - 15214229
Alignment:
Q  12 atgaagaaacaacccaccaatagcgatttcctgaatgttccatggtgcatgcatttttcttttgatttcagtttcagtgcaataaacaattctttagtga 111  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15214447 atgaagaaataacccaccaatagcgatttcctgaatgttccatggtgcatgcatttttcttttgatttcagtttcagtgcaataaacaattctttagtga 15214348  T
Q  112 ttttatatttatccattgattctattatgtccttcatttctttcctattatgttctcaacaaaaatttgttcttcaatttttgttttcattattgtaggg 211  Q
    |||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||    
T  15214347 ttttatatttatccattgtttctattatatccttcatttctttcctattatgttctcaacaaaaatttgttcttcaatttttgccttcattattgtaggg 15214248  T
Q  212 gaggcgtggcctagatagt 230  Q
    |||| ||||||| ||||||    
T  15214247 gaggagtggcctggatagt 15214229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 12 - 230
Target Start/End: Complemental strand, 15253666 - 15253448
Alignment:
Q  12 atgaagaaacaacccaccaatagcgatttcctgaatgttccatggtgcatgcatttttcttttgatttcagtttcagtgcaataaacaattctttagtga 111  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15253666 atgaagaaataacccaccaatagcgatttcctgaatgttccatggtgcatgcatttttcttttgatttcagtttcagtgcaataaacaattctttagtga 15253567  T
Q  112 ttttatatttatccattgattctattatgtccttcatttctttcctattatgttctcaacaaaaatttgttcttcaatttttgttttcattattgtaggg 211  Q
    |||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||    
T  15253566 ttttatatttatccattgtttctattatatccttcatttctttcctattatgttctcaacaaaaatttgttcttcaatttttgccttcattattgtaggg 15253467  T
Q  212 gaggcgtggcctagatagt 230  Q
    |||| ||||||| ||||||    
T  15253466 gaggagtggcctggatagt 15253448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 187; Significance: 1e-101; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 12 - 230
Target Start/End: Original strand, 45621930 - 45622148
Alignment:
Q  12 atgaagaaacaacccaccaatagcgatttcctgaatgttccatggtgcatgcatttttcttttgatttcagtttcagtgcaataaacaattctttagtga 111  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||    
T  45621930 atgaagaaacaacccaccaatagcggtttcctgaatgttccatggtgcatgcatttttcttttgatttcagtttcagtgcaataaacaactctttagcga 45622029  T
Q  112 ttttatatttatccattgattctattatgtccttcatttctttcctattatgttctcaacaaaaatttgttcttcaatttttgttttcattattgtaggg 211  Q
     ||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||    
T  45622030 atttatatttatccattgtttctattatatccttcatttctttcctattatgttctcaacaaaaatttgttcttcaatttttgccttcattattgtaggg 45622129  T
Q  212 gaggcgtggcctagatagt 230  Q
    |||||||||||||||||||    
T  45622130 gaggcgtggcctagatagt 45622148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 183; Significance: 4e-99; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 12 - 230
Target Start/End: Original strand, 20188258 - 20188476
Alignment:
Q  12 atgaagaaacaacccaccaatagcgatttcctgaatgttccatggtgcatgcatttttcttttgatttcagtttcagtgcaataaacaattctttagtga 111  Q
    ||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  20188258 atgaagaaacaccccaccaatagcggtttcctgaatgttccatggtgcatgcatttttcttttgatttcagtttcactgcaataaacaattctttagtga 20188357  T
Q  112 ttttatatttatccattgattctattatgtccttcatttctttcctattatgttctcaacaaaaatttgttcttcaatttttgttttcattattgtaggg 211  Q
    |||||||||||| ||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||    
T  20188358 ttttatatttatgcattgtttctattatatccttcatttctttcctattatgttctcaacaaaaatttgttcttcaatttttgccttcattattgtaggg 20188457  T
Q  212 gaggcgtggcctagatagt 230  Q
    |||| ||||||||||||||    
T  20188458 gaggagtggcctagatagt 20188476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 55 - 226
Target Start/End: Original strand, 51091612 - 51091788
Alignment:
Q  55 ggtgcatgcatttttcttttgatt----tcagtttcagtgcaataaacaattctttagtgattttatatttatccattgattctattatgtccttcattt 150  Q
    |||||||||||||||||||| |||    |||||||||||||||||||||||||||||||||||||||||| ||| |||| ||||||||| |||| |||||    
T  51091612 ggtgcatgcatttttcttttaattaatttcagtttcagtgcaataaacaattctttagtgattttatattcatcaattgtttctattatatcctacattt 51091711  T
Q  151 ctttcctattat-gttctcaacaaaaatttgttcttcaatttttgttttcattattgtaggggaggcgtggcctaga 226  Q
    ||||||||||||  || ||||| |   ||| |||||||| |||||  ||||||||||| ||||||| ||| ||||||    
T  51091712 ctttcctattatatttatcaaccatttttttttcttcaaattttgccttcattattgtgggggaggagtgacctaga 51091788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 179; Significance: 1e-96; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 12 - 230
Target Start/End: Original strand, 22603451 - 22603668
Alignment:
Q  12 atgaagaaacaacccaccaatagcgatttcctgaatgttccatggtgcatgcatttttcttttgatttcagtttcagtgcaataaacaattctttagtga 111  Q
    ||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||    
T  22603451 atgaagaaacaacccaccaatagcggtttcctgagtgttccatggtgcatgcatttttcttttgatttttgtttcagtgcaataaacaattctttagtga 22603550  T
Q  112 ttttatatttatccattgattctattatgtccttcatttctttcctattatgttctcaacaaaaatttgttcttcaatttttgttttcattattgtaggg 211  Q
    |||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||  |||||||||||||||    
T  22603551 ttttatatttatccattgtttctattatatccttcatttctttcctattatgttctcaacaaaaatttgttcttcaa-ttttgccttcattattgtaggg 22603649  T
Q  212 gaggcgtggcctagatagt 230  Q
    |||||||||||||||||||    
T  22603650 gaggcgtggcctagatagt 22603668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University