View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3586_low_26 (Length: 237)

Name: NF3586_low_26
Description: NF3586
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3586_low_26
NF3586_low_26
[»] chr2 (23 HSPs)
chr2 (1-225)||(9292037-9292261)
chr2 (62-225)||(9316195-9316358)
chr2 (86-223)||(9274706-9274843)
chr2 (62-225)||(9060935-9061098)
chr2 (62-225)||(8573299-8573462)
chr2 (69-182)||(7115482-7115595)
chr2 (1-134)||(16269189-16269325)
chr2 (62-142)||(12012429-12012509)
chr2 (77-208)||(10347973-10348104)
chr2 (76-133)||(10353296-10353353)
chr2 (62-142)||(12006001-12006081)
chr2 (1-60)||(8576392-8576451)
chr2 (86-209)||(9321167-9321290)
chr2 (83-221)||(9283994-9284132)
chr2 (86-207)||(9328787-9328908)
chr2 (1-54)||(10371958-10372011)
chr2 (1-60)||(9316113-9316172)
chr2 (1-55)||(9065581-9065635)
chr2 (61-137)||(11987375-11987454)
chr2 (62-209)||(9065408-9065556)
chr2 (15-60)||(11987473-11987518)
chr2 (1-53)||(9284180-9284232)
chr2 (93-133)||(10372062-10372102)
[»] chr8 (1 HSPs)
chr8 (77-209)||(41966539-41966671)
[»] chr1 (2 HSPs)
chr1 (86-209)||(29443146-29443269)
chr1 (86-137)||(29423459-29423510)
[»] scaffold0667 (2 HSPs)
scaffold0667 (77-137)||(4665-4725)
scaffold0667 (1-60)||(4571-4630)
[»] chr4 (2 HSPs)
chr4 (77-133)||(26575049-26575105)
chr4 (18-54)||(26574978-26575014)
[»] chr3 (1 HSPs)
chr3 (14-54)||(37462605-37462645)


Alignment Details
Target: chr2 (Bit Score: 221; Significance: 1e-122; HSPs: 23)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 9292037 - 9292261
Alignment:
Q  1 ttagtagtttcaaaattcacagtcatacaaagacactctcctaaaacagcaacagcaattgtaacctcttcaccttctatttcagcaggaaaaggaacca 100  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9292037 ttagtagtttcataattcacagtcatacaaagacactctcctaaaacagcaacagcaattgtaacctcttcaccttctatttcagcaggaaaaggaacca 9292136  T
Q  101 cattgaaagtctcaagtgttaggttaaaagcgacaatgaaacaagggtgtgactcaacaattgtccgagtcattacccagtggatagaattctgaacaaa 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9292137 cattgaaagtctcaagtgttaggttaaaagcgacaatgaaacaagggtgtgactcaacaattgtccgagtcattacccagtggatagaattctgaacaaa 9292236  T
Q  201 aacccccatagcttgaacatattga 225  Q
    |||||||||||||||||||||||||    
T  9292237 aacccccatagcttgaacatattga 9292261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 62 - 225
Target Start/End: Original strand, 9316195 - 9316358
Alignment:
Q  62 taacctcttcaccttctatttcagcaggaaaaggaaccacattgaaagtctcaagtgttaggttaaaagcgacaatgaaacaagggtgtgactcaacaat 161  Q
    ||||||||  || ||||||||||||||||| |||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||  || |    
T  9316195 taacctctatactttctatttcagcaggaagaggaaccacattgaaaatctcaagtgttaggttaaacgcgacaatgaaacaagggtgtgactcttcact 9316294  T
Q  162 tgtccgagtcattacccagtggatagaattctgaacaaaaacccccatagcttgaacatattga 225  Q
    |  | |||||||||||||||| | |||||||||||||||||||||||| |||||||||||||||    
T  9316295 ttgctgagtcattacccagtgaagagaattctgaacaaaaacccccatggcttgaacatattga 9316358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 86 - 223
Target Start/End: Original strand, 9274706 - 9274843
Alignment:
Q  86 caggaaaaggaaccacattgaaagtctcaagtgttaggttaaaagcgacaatgaaacaagggtgtgactcaacaattgtccgagtcattacccagtggat 185  Q
    |||||| |||||||||||||||| | ||||||||||||||||| || ||||| |||||||||||||||||| |||||  || ||||||||||||||| |     
T  9274706 caggaagaggaaccacattgaaaatatcaagtgttaggttaaacgcaacaattaaacaagggtgtgactcatcaatttccctagtcattacccagtgaag 9274805  T
Q  186 agaattctgaacaaaaacccccatagcttgaacatatt 223  Q
    |||||||| |||||||| |||||| |||||||||||||    
T  9274806 agaattctcaacaaaaatccccatggcttgaacatatt 9274843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 62 - 225
Target Start/End: Complemental strand, 9061098 - 9060935
Alignment:
Q  62 taacctcttcaccttctatttcagcaggaaaaggaaccacattgaaagtctcaagtgttaggttaaaagcgacaatgaaacaagggtgtgactcaacaat 161  Q
    |||||||||||||||||| |||| | |||| ||||||| |||||||| | |||||||| |||||||| |||||||| || ||||| | |||| || |||     
T  9061098 taacctcttcaccttctaattcaacgggaagaggaacctcattgaaaatttcaagtgtgaggttaaatgcgacaattaaccaaggatatgacccatcaag 9060999  T
Q  162 tgtccgagtcattacccagtggatagaattctgaacaaaaacccccatagcttgaacatattga 225  Q
    | ||   | ||| |||||||| | |||||||||||||||||||||||| |||||||||||||||    
T  9060998 tttcttggccataacccagtgaagagaattctgaacaaaaacccccatggcttgaacatattga 9060935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 62 - 225
Target Start/End: Complemental strand, 8573462 - 8573299
Alignment:
Q  62 taacctcttcaccttctatttcagcaggaaaaggaaccacattgaaagtctcaagtgttaggttaaaagcgacaatgaaacaagggtgtgactcaacaat 161  Q
    |||||||||||||||||| |||| |||||| ||||||| | | |||| | |||||||| |||||||| |||||||| || ||||| | |||| || |||     
T  8573462 taacctcttcaccttctaattcaacaggaagaggaacctcgtagaaaatttcaagtgtgaggttaaatgcgacaattaaccaaggatatgacccatcaag 8573363  T
Q  162 tgtccgagtcattacccagtggatagaattctgaacaaaaacccccatagcttgaacatattga 225  Q
    | ||   | ||| |||||||| | |||||||||||||||||||||||| |||||||||||||||    
T  8573362 tttcttggccataacccagtgaagagaattctgaacaaaaacccccatggcttgaacatattga 8573299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 69 - 182
Target Start/End: Complemental strand, 7115595 - 7115482
Alignment:
Q  69 ttcaccttctatttcagcaggaaaaggaaccacattgaaagtctcaagtgttaggttaaaagcgacaatgaaacaagggtgtgactcaacaattgtccga 168  Q
    ||||||| ||| |||| |||||| ||||||| || |||||  |||||||||||||||||| |||||||| |||||||||||||||||| ||| | |||||    
T  7115595 ttcacctcctaattcatcaggaagaggaacctcaatgaaacgctcaagtgttaggttaaacgcgacaattaaacaagggtgtgactcatcaagtttccga 7115496  T
Q  169 gtcattacccagtg 182  Q
    | ||||| ||||||    
T  7115495 gacattatccagtg 7115482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 1 - 134
Target Start/End: Original strand, 16269189 - 16269325
Alignment:
Q  1 ttagtagtttcaaaattcacagtcatacaaagacactctcctaaaacagcaacagcaattgt-aacctc--ttcaccttctatttcagcaggaaaaggaa 97  Q
    |||||||||||| |||||||||| |||||||||||  |||| |||||||||||| | |||   || |||  |||||||| || ||||||||||| |||||    
T  16269189 ttagtagtttcataattcacagttatacaaagacatcctcccaaaacagcaacatcgattaacaaactcgtttcaccttgtaattcagcaggaagaggaa 16269288  T
Q  98 ccacattgaaagtctcaagtgttaggttaaaagcgac 134  Q
    || | |||||| ||||||||||||||||||| |||||    
T  16269289 cctcgttgaaaatctcaagtgttaggttaaacgcgac 16269325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 62 - 142
Target Start/End: Complemental strand, 12012509 - 12012429
Alignment:
Q  62 taacctcttcaccttctatttcagcaggaaaaggaaccacattgaaagtctcaagtgttaggttaaaagcgacaatgaaac 142  Q
    ||||||||||||||  ||||||| ||||||| |||||| ||||||||  |||||||||||||||||| |||||||| ||||    
T  12012509 taacctcttcacctcatatttcatcaggaaatggaacctcattgaaaagctcaagtgttaggttaaacgcgacaattaaac 12012429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 77 - 208
Target Start/End: Original strand, 10347973 - 10348104
Alignment:
Q  77 ctatttcagcaggaaaaggaaccacattgaaagtctcaagtgttaggttaaaagcgacaatgaaacaagggtgtgactcaacaattgtccgagtcattac 176  Q
    |||||||| |||||| ||||||| |||||||| | |||||||| |||||||| |||||||| ||| |||| ||| || || ||| | ||   ||||| |     
T  10347973 ctatttcatcaggaagaggaacctcattgaaaatttcaagtgtgaggttaaacgcgacaattaaagaaggatgtaacccatcaagtttcttcgtcataat 10348072  T
Q  177 ccagtggatagaattctgaacaaaaaccccca 208  Q
    |||||| |||||||||| ||||||||||||||    
T  10348073 ccagtgaatagaattctcaacaaaaaccccca 10348104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 76 - 133
Target Start/End: Original strand, 10353296 - 10353353
Alignment:
Q  76 tctatttcagcaggaaaaggaaccacattgaaagtctcaagtgttaggttaaaagcga 133  Q
    ||||||||| |||||| ||||||| |||||||||||||||||||||||||||| ||||    
T  10353296 tctatttcatcaggaagaggaacctcattgaaagtctcaagtgttaggttaaacgcga 10353353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 62 - 142
Target Start/End: Complemental strand, 12006081 - 12006001
Alignment:
Q  62 taacctcttcaccttctatttcagcaggaaaaggaaccacattgaaagtctcaagtgttaggttaaaagcgacaatgaaac 142  Q
    ||||||||||||||  ||||||| |||||||||||||| | ||||||  |||||||||||||||||| |||| ||| ||||    
T  12006081 taacctcttcacctcttatttcatcaggaaaaggaacctcgttgaaaacctcaagtgttaggttaaacgcgaaaattaaac 12006001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 8576451 - 8576392
Alignment:
Q  1 ttagtagtttcaaaattcacagtcatacaaagacactctcctaaaacagcaacagcaatt 60  Q
    |||||||||||| |||||||| |||||||||||||| |||| |||||||||||| |||||    
T  8576451 ttagtagtttcataattcacactcatacaaagacaccctccaaaaacagcaacatcaatt 8576392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 86 - 209
Target Start/End: Original strand, 9321167 - 9321290
Alignment:
Q  86 caggaaaaggaaccacattgaaagtctcaagtgttaggttaaaagcgacaatgaaacaagggtgtgactcaacaattgtccgagtcattacccagtggat 185  Q
    |||||| |||||||||||||||| | ||||||||||||||||| || ||||| ||| |||| ||| |  || ||| | ||   ||||||| |||||| |     
T  9321167 caggaagaggaaccacattgaaaatttcaagtgttaggttaaatgcaacaattaaagaaggatgtaatccaccaagtttctttgtcattatccagtgaag 9321266  T
Q  186 agaattctgaacaaaaacccccat 209  Q
    |||||||| |||||||||||||||    
T  9321267 agaattctcaacaaaaacccccat 9321290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 83 - 221
Target Start/End: Complemental strand, 9284132 - 9283994
Alignment:
Q  83 cagcaggaaaaggaaccacattgaaagtctcaagtgttaggttaaaagcgacaatgaaacaagggtgtgactcaacaattgtccgagtcattacccagtg 182  Q
    ||||||||| ||||||| | ||||||  ||| |||||||||||||| |||||||| |||||| ||| |||| || |||   ||     ||||| ||||||    
T  9284132 cagcaggaagaggaacctctttgaaaacctctagtgttaggttaaacgcgacaattaaacaaaggtctgacccatcaagattcttttccattatccagtg 9284033  T
Q  183 gatagaattctgaacaaaaacccccatagcttgaacata 221  Q
     |||||||||| ||||||||||||||| |||||| ||||    
T  9284032 aatagaattctcaacaaaaacccccatggcttgagcata 9283994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 86 - 207
Target Start/End: Original strand, 9328787 - 9328908
Alignment:
Q  86 caggaaaaggaaccacattgaaagtctcaagtgttaggttaaaagcgacaatgaaacaagggtgtgactcaacaattgtccgagtcattacccagtggat 185  Q
    |||||| |||||||||||||||| | ||||||||||||||||| || ||||| ||| |||| ||| |  || ||| | ||  |||||||| |||||| |     
T  9328787 caggaagaggaaccacattgaaaatttcaagtgttaggttaaacgcaacaattaaagaaggatgtaatccaccaagtttcttagtcattatccagtgaag 9328886  T
Q  186 agaattctgaacaaaaaccccc 207  Q
    |||||||| ||| |||||||||    
T  9328887 agaattctcaaccaaaaccccc 9328908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 10371958 - 10372011
Alignment:
Q  1 ttagtagtttcaaaattcacagtcatacaaagacactctcctaaaacagcaaca 54  Q
    |||||||||| | ||| ||||||||||||||||||| |||||||||||||||||    
T  10371958 ttagtagttttataatccacagtcatacaaagacaccctcctaaaacagcaaca 10372011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 9316113 - 9316172
Alignment:
Q  1 ttagtagtttcaaaattcacagtcatacaaagacactctcctaaaacagcaacagcaatt 60  Q
    |||||||||| | |||||| | |||||||||||||| |||| ||||||||||||||||||    
T  9316113 ttagtagtttgataattcaaaatcatacaaagacaccctcccaaaacagcaacagcaatt 9316172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 9065635 - 9065581
Alignment:
Q  1 ttagtagtttcaaaattcacagtcatacaaagacactctcctaaaacagcaacag 55  Q
    |||||||||||| |||||| | |||||||||||||| |||| |||||||||||||    
T  9065635 ttagtagtttcataattcaaaatcatacaaagacaccctcccaaaacagcaacag 9065581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 61 - 137
Target Start/End: Complemental strand, 11987454 - 11987375
Alignment:
Q  61 gtaacctcttcaccttct---atttcagcaggaaaaggaaccacattgaaagtctcaagtgttaggttaaaagcgacaat 137  Q
    ||||||||||||||| ||   ||||||  ||||||||||||| ||||||||  ||| |||||||||||||| ||||||||    
T  11987454 gtaacctcttcacctcctcctatttcatgaggaaaaggaacctcattgaaaacctcgagtgttaggttaaatgcgacaat 11987375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 62 - 209
Target Start/End: Complemental strand, 9065556 - 9065408
Alignment:
Q  62 taacctcttcaccttctatttcagcaggaaaaggaaccac-attgaaagtctcaagtgttaggttaaaagcgacaatgaaacaagggtgtgactcaacaa 160  Q
    ||||||||||||||  ||||||||||||||  |||||| | ||||||| | |||||||| |||||||| || ||||| ||| |||| ||| ||  | | |    
T  9065556 taacctcttcacctcttatttcagcaggaaggggaacctcaattgaaaatttcaagtgtgaggttaaatgcaacaattaaagaaggatgtaaccgatcta 9065457  T
Q  161 ttgtccgagtcattacccagtggatagaattctgaacaaaaacccccat 209  Q
     | ||   ||||||| | |||| |||||||||| |||||||||||||||    
T  9065456 gtttcttcgtcattatcaagtgaatagaattctcaacaaaaacccccat 9065408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 15 - 60
Target Start/End: Complemental strand, 11987518 - 11987473
Alignment:
Q  15 attcacagtcatacaaagacactctcctaaaacagcaacagcaatt 60  Q
    ||||||||||| |||||||||| |||| |||||||||||| |||||    
T  11987518 attcacagtcaaacaaagacaccctcccaaaacagcaacatcaatt 11987473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 9284232 - 9284180
Alignment:
Q  1 ttagtagtttcaaaattcacagtcatacaaagacactctcctaaaacagcaac 53  Q
    |||||||||| | |||||||| |||||| ||||||  ||||||||||||||||    
T  9284232 ttagtagtttgataattcacaatcatactaagacaacctcctaaaacagcaac 9284180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 93 - 133
Target Start/End: Original strand, 10372062 - 10372102
Alignment:
Q  93 aggaaccacattgaaagtctcaagtgttaggttaaaagcga 133  Q
    ||||||| |||||||||||||||||| ||||||||| ||||    
T  10372062 aggaacctcattgaaagtctcaagtgataggttaaacgcga 10372102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 77 - 209
Target Start/End: Complemental strand, 41966671 - 41966539
Alignment:
Q  77 ctatttcagcaggaaaaggaaccacattgaaagtctcaagtgttaggttaaaagcgacaatgaaacaagggtgtgactcaacaattgtccgagtcattac 176  Q
    ||||||||||||||| |||||||   |||||| ||||||||||||||||||| |||||||| |||||||||||| |  || ||| |  |   |||||||     
T  41966671 ctatttcagcaggaagaggaacctggttgaaaatctcaagtgttaggttaaacgcgacaattaaacaagggtgtaatccatcaagttccttggtcattat 41966572  T
Q  177 ccagtggatagaattctgaacaaaaacccccat 209  Q
    |||||| | |||||| |||||||||||||||||    
T  41966571 ccagtgaagagaattgtgaacaaaaacccccat 41966539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 86 - 209
Target Start/End: Complemental strand, 29443269 - 29443146
Alignment:
Q  86 caggaaaaggaaccacattgaaagtctcaagtgttaggttaaaagcgacaatgaaacaagggtgtgactcaacaattgtccgagtcattacccagtggat 185  Q
    |||||||||||||| |||||||| |||| |||||||||||||| ||||||||   || ||| ||  ||  | ||| | ||||||||||||||||||| |     
T  29443269 caggaaaaggaacctcattgaaaatctcgagtgttaggttaaacgcgacaattgcacgaggttgcaacagatcaagtttccgagtcattacccagtgaag 29443170  T
Q  186 agaattctgaacaaaaacccccat 209  Q
     ||||||| ||||||| |||||||    
T  29443169 ggaattctcaacaaaatcccccat 29443146  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 86 - 137
Target Start/End: Original strand, 29423459 - 29423510
Alignment:
Q  86 caggaaaaggaaccacattgaaagtctcaagtgttaggttaaaagcgacaat 137  Q
    |||||||||||||| |||||||| ||||| ||||||||||||| || |||||    
T  29423459 caggaaaaggaacctcattgaaaatctcatgtgttaggttaaacgcaacaat 29423510  T

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Target: scaffold0667 (Bit Score: 37; Significance: 0.000000000005; HSPs: 2)
Name: scaffold0667
Description:

Target: scaffold0667; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 77 - 137
Target Start/End: Original strand, 4665 - 4725
Alignment:
Q  77 ctatttcagcaggaaaaggaaccacattgaaagtctcaagtgttaggttaaaagcgacaat 137  Q
    |||||||  |||||| ||||||| |||||||| | ||||||||||||||||||||||||||    
T  4665 ctatttcgtcaggaagaggaacctcattgaaaatttcaagtgttaggttaaaagcgacaat 4725  T

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Target: scaffold0667; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 4571 - 4630
Alignment:
Q  1 ttagtagtttcaaaattcacagtcatacaaagacactctcctaaaacagcaacagcaatt 60  Q
    |||||||||||| ||||||||||||||||||||||  |||| ||| |||||||| |||||    
T  4571 ttagtagtttcataattcacagtcatacaaagacatcctcccaaagcagcaacatcaatt 4630  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 77 - 133
Target Start/End: Original strand, 26575049 - 26575105
Alignment:
Q  77 ctatttcagcaggaaaaggaaccacattgaaagtctcaagtgttaggttaaaagcga 133  Q
    |||||||| |||||| ||||||| | ||||||||||||||||  |||||||||||||    
T  26575049 ctatttcatcaggaagaggaacctcgttgaaagtctcaagtgaaaggttaaaagcga 26575105  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 54
Target Start/End: Original strand, 26574978 - 26575014
Alignment:
Q  18 cacagtcatacaaagacactctcctaaaacagcaaca 54  Q
    ||||||||||||||||||| |||||||| ||||||||    
T  26574978 cacagtcatacaaagacaccctcctaaatcagcaaca 26575014  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 54
Target Start/End: Original strand, 37462605 - 37462645
Alignment:
Q  14 aattcacagtcatacaaagacactctcctaaaacagcaaca 54  Q
    ||||||||||||||||||||||  |||| ||||||||||||    
T  37462605 aattcacagtcatacaaagacagcctcccaaaacagcaaca 37462645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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