View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3586_low_27 (Length: 230)

Name: NF3586_low_27
Description: NF3586
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3586_low_27
NF3586_low_27
[»] chr8 (2 HSPs)
chr8 (19-199)||(38964082-38964262)
chr8 (78-122)||(13749135-13749179)
[»] chr2 (2 HSPs)
chr2 (81-132)||(35797541-35797592)
chr2 (58-127)||(16510285-16510354)
[»] chr1 (2 HSPs)
chr1 (18-96)||(14326688-14326767)
chr1 (82-127)||(37047072-37047117)
[»] chr4 (1 HSPs)
chr4 (78-126)||(26730084-26730132)
[»] chr3 (1 HSPs)
chr3 (91-127)||(10538198-10538234)


Alignment Details
Target: chr8 (Bit Score: 165; Significance: 2e-88; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 19 - 199
Target Start/End: Original strand, 38964082 - 38964262
Alignment:
Q  19 cttgggaccttggactgtgctcatctcaaggtttcaagttcaagtttgaatcctcctaatgccaatttttgtgggctagttcatacaaaactttgctcta 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  38964082 cttgggaccttggactgtgctcatctcaaggtttcaagttcaagtttgaatcctcctaatgccaatttttgtgggctagttcatacagaactttgctcta 38964181  T
Q  119 gctttaaataggatcctaagtagacggtaggattggtcctcccagattagtaggtccctaggtcggataccgtgttttaaa 199  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||    
T  38964182 gctttaaatagggtcctaagtagacggtaggattggtcctcccagattagtaggtccctaggccggagaccgtgttttaaa 38964262  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 78 - 122
Target Start/End: Original strand, 13749135 - 13749179
Alignment:
Q  78 tgccaatttttgtgggctagttcatacaaaactttgctctagctt 122  Q
    |||||||||| |||||| |||||||||||| ||||||||| ||||    
T  13749135 tgccaattttggtgggcaagttcatacaaagctttgctctggctt 13749179  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 81 - 132
Target Start/End: Original strand, 35797541 - 35797592
Alignment:
Q  81 caatttttgtgggctagttcatacaaaactttgctctagctttaaataggat 132  Q
    ||||||| |||||| |||||||||||||||||| | | ||||||||||||||    
T  35797541 caattttggtgggcaagttcatacaaaactttggtttggctttaaataggat 35797592  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 58 - 127
Target Start/End: Original strand, 16510285 - 16510354
Alignment:
Q  58 tcaagtttgaatcctcctaatgccaatttttgtgggctagttcatacaaaactttgctctagctttaaat 127  Q
    ||||||| ||||||| |  |||||||||| ||||||||||| |||||||| |  |||||| |||||||||    
T  16510285 tcaagttcgaatccttcctatgccaatttctgtgggctagtccatacaaagcaatgctctggctttaaat 16510354  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 18 - 96
Target Start/End: Original strand, 14326688 - 14326767
Alignment:
Q  18 acttgggaccttggactgtgctcatctcaaggtttcaagt-tcaagtttgaatcctcctaatgccaatttttgtgggcta 96  Q
    |||| ||||||||||  |||||| ||||||||| || | | ||||||| |||||||||| ||||||| ||||||||||||    
T  14326688 actttggaccttggagcgtgctcctctcaaggtctcgactctcaagttcgaatcctcctgatgccaacttttgtgggcta 14326767  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 82 - 127
Target Start/End: Original strand, 37047072 - 37047117
Alignment:
Q  82 aatttttgtgggctagttcatacaaaactttgctctagctttaaat 127  Q
    |||||| |||||||||| |||||| | |||||||||||||||||||    
T  37047072 aattttggtgggctagtccatacagagctttgctctagctttaaat 37047117  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 78 - 126
Target Start/End: Complemental strand, 26730132 - 26730084
Alignment:
Q  78 tgccaatttttgtgggctagttcatacaaaactttgctctagctttaaa 126  Q
    |||||||||||||||| ||||||||| | |||||||||| | |||||||    
T  26730132 tgccaatttttgtgggttagttcataaagaactttgctccatctttaaa 26730084  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 91 - 127
Target Start/End: Complemental strand, 10538234 - 10538198
Alignment:
Q  91 gggctagttcatacaaaactttgctctagctttaaat 127  Q
    |||||||| |||||||| |||||||||||||||||||    
T  10538234 gggctagtccatacaaagctttgctctagctttaaat 10538198  T

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