View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3586_low_3 (Length: 482)
Name: NF3586_low_3
Description: NF3586
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3586_low_3 |
 | |
|
| [»] scaffold2010 (1 HSPs) |
| | |
|
Alignment Details
Target: chr7 (Bit Score: 377; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 377; E-Value: 0
Query Start/End: Original strand, 19 - 403
Target Start/End: Original strand, 30503281 - 30503665
Alignment:
| Q |
19 |
tcgatgaccgggaacttatggctaatcatattcatttttatcctctcatattttctcaaatttcaaatctcaacccttaacatctttcttcaaattttta |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30503281 |
tcgatgaccgggaacttatggctaatcatattcatttttatcctctcatattttctcaaatttcaaatctcaacccttaacatctttcttcaaattttta |
30503380 |
T |
|
| Q |
119 |
aattccaaaaccttcatctttatatatttcaatggtttaaatgtttcacattatttcggggattctaatccctcaatgacccaaaagtcttaaatatatt |
218 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
30503381 |
aattccaaaaccttcatctttatatatttcaatggtttaaatgtttcacattatttcggggatattaatccctcaatgacccaaaagtcttaaatatatt |
30503480 |
T |
|
| Q |
219 |
aaggtcgaagtcgtcctttaatgcatgaaggtcaaagaaatcctttaataggccaaactgtattttgggtccattttccatttcatttttctcttgttct |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30503481 |
aaggtcgaagtcgtcctttaatgcatgaaggtcaaagaaatcctttaataggccaaactgtattttgggtccattttccatttcatttttctcttgttct |
30503580 |
T |
|
| Q |
319 |
ttggtccttcaatatgtaaaatggtaaagagttgaagtcttatttcaatattgcgtaaaaacgcagaatttgaattaatcctcaa |
403 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30503581 |
ttggtccttcaatatgtaaaatggtaaagagttgaagtcttatttcaatattgcgtaaaaacgcagaatttgaattaatcctcaa |
30503665 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 440 - 471
Target Start/End: Complemental strand, 39142508 - 39142477
Alignment:
| Q |
440 |
taaaaggcttaattgcacttttggtcccctat |
471 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
39142508 |
taaaaggcttaattgcacttttggtcccctat |
39142477 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 442 - 472
Target Start/End: Original strand, 4886247 - 4886277
Alignment:
| Q |
442 |
aaaggcttaattgcacttttggtcccctatg |
472 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
4886247 |
aaaggcttaattgcacttttggtcccctatg |
4886277 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold2010 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold2010
Description:
Target: scaffold2010; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 444 - 472
Target Start/End: Complemental strand, 781 - 753
Alignment:
| Q |
444 |
aggcttaattgcacttttggtcccctatg |
472 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
781 |
aggcttaattgcacttttggtcccctatg |
753 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University