View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3586_low_30 (Length: 203)

Name: NF3586_low_30
Description: NF3586
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3586_low_30
NF3586_low_30
[»] chr2 (32 HSPs)
chr2 (1-203)||(9291600-9291802)
chr2 (60-203)||(9315759-9315899)
chr2 (77-203)||(9284452-9284579)
chr2 (87-202)||(12012812-12012927)
chr2 (94-197)||(7115937-7116040)
chr2 (87-202)||(11987750-11987865)
chr2 (87-202)||(12006381-12006496)
chr2 (76-201)||(10347520-10347639)
chr2 (80-195)||(10352866-10352981)
chr2 (87-194)||(9328364-9328470)
chr2 (128-197)||(8573794-8573863)
chr2 (137-192)||(9065887-9065942)
chr2 (108-195)||(9274285-9274372)
chr2 (77-190)||(9294915-9295029)
chr2 (1-49)||(9061598-9061646)
chr2 (114-194)||(9320773-9320853)
chr2 (137-201)||(9364442-9364506)
chr2 (1-47)||(9315681-9315727)
chr2 (1-49)||(9295077-9295125)
chr2 (127-195)||(10335660-10335728)
chr2 (127-203)||(10341153-10341229)
chr2 (9-56)||(9328260-9328307)
chr2 (1-56)||(12012962-12013017)
chr2 (87-202)||(12019151-12019266)
chr2 (1-55)||(11987901-11987955)
chr2 (8-56)||(8573941-8573989)
chr2 (1-49)||(9274224-9274272)
chr2 (112-203)||(10371623-10371717)
chr2 (1-56)||(9364279-9364334)
chr2 (137-202)||(9061422-9061487)
chr2 (5-49)||(9284627-9284671)
chr2 (5-45)||(9320637-9320677)
[»] scaffold0667 (2 HSPs)
scaffold0667 (123-197)||(4253-4327)
scaffold0667 (1-46)||(4107-4152)
[»] chr3 (2 HSPs)
chr3 (131-196)||(37462273-37462338)
chr3 (1-56)||(37462132-37462188)
[»] chr8 (2 HSPs)
chr8 (1-53)||(41967150-41967202)
chr8 (137-202)||(41966971-41967036)
[»] chr1 (3 HSPs)
chr1 (155-201)||(29468044-29468090)
chr1 (156-198)||(29453571-29453613)
chr1 (56-105)||(29453643-29453692)


Alignment Details
Target: chr2 (Bit Score: 199; Significance: 1e-108; HSPs: 32)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 203
Target Start/End: Original strand, 9291600 - 9291802
Alignment:
Q  1 tcctataataagaattcaatttaacctttagcatagagtttaactacatgtatcatgaaattagcttataaatagcaaaaactcagataatcaataagaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9291600 tcctataataagaattcaatttaacctttagcatagagtttaactacatgtatcatgaaattagcttataaatagcaaaaactcagataatcaataagaa 9291699  T
Q  101 gtaccgcttctttctcttgttcgtatgattctccttcttcctacaattatcaacagggaaggaaggtggtagaagactttcaacacaaatcatagcttca 200  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9291700 gtaccgtttctttctcttgttcgtatgattctccttcttcctacaattatcaacagggaaggaaggtggtagaagactttcaacacaaatcatagcttca 9291799  T
Q  201 tcc 203  Q
    |||    
T  9291800 tcc 9291802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 60 - 203
Target Start/End: Original strand, 9315759 - 9315899
Alignment:
Q  60 attagcttataaatagcaaaaactcagataatcaataagaagtaccgcttctttctcttgttcgtatgattctccttcttcctacaattatcaacaggga 159  Q
    |||| |||||| |||||||||||||| |||||  |||||   ||||   ||||  ||||| | ||||||||||||||||||||||||| |||||||||||    
T  9315759 attaacttatacatagcaaaaactcaaataatatataag---taccttctcttgttcttgcttgtatgattctccttcttcctacaataatcaacaggga 9315855  T
Q  160 aggaaggtggtagaagactttcaacacaaatcatagcttcatcc 203  Q
    |||||||||||| |||||||||||||||||||||||||||||||    
T  9315856 aggaaggtggtacaagactttcaacacaaatcatagcttcatcc 9315899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 68; E-Value: 1e-30
Query Start/End: Original strand, 77 - 203
Target Start/End: Complemental strand, 9284579 - 9284452
Alignment:
Q  77 aaaaactcagataatcaataa-gaagtaccgcttctttctcttgttcgtatgattctccttcttcctacaattatcaacagggaaggaaggtggtagaag 175  Q
    ||||||||||||||||||||| ||||||||   |||| |||||| |   | ||||||||||||| ||| ||||||||||||||||||||||||| | |||    
T  9284579 aaaaactcagataatcaataaagaagtaccttctcttgctcttgcttaaacgattctccttcttactagaattatcaacagggaaggaaggtggcacaag 9284480  T
Q  176 actttcaacacaaatcatagcttcatcc 203  Q
    ||||||||||||||||||||||||||||    
T  9284479 actttcaacacaaatcatagcttcatcc 9284452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 68; E-Value: 1e-30
Query Start/End: Original strand, 87 - 202
Target Start/End: Complemental strand, 12012927 - 12012812
Alignment:
Q  87 ataatcaataagaagtaccgcttctttctcttgttcgtatgattctccttcttcctacaattatcaacagggaaggaaggtggtagaagactttcaacac 186  Q
    |||||||||||||||||||   |||| |||||| | | ||||||| ||||||||||| ||||||||||||||||||| ||||||| ||||||| ||||||    
T  12012927 ataatcaataagaagtaccttctcttgctcttgcttgaatgattccccttcttcctagaattatcaacagggaaggagggtggtacaagacttccaacac 12012828  T
Q  187 aaatcatagcttcatc 202  Q
    ||||||||||||||||    
T  12012827 aaatcatagcttcatc 12012812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 64; E-Value: 3e-28
Query Start/End: Original strand, 94 - 197
Target Start/End: Complemental strand, 7116040 - 7115937
Alignment:
Q  94 ataagaagtaccgcttctttctcttgttcgtatgattctccttcttcctacaattatcaacagggaaggaaggtggtagaagactttcaacacaaatcat 193  Q
    ||||||||||||   |||| |||||| | ||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||| ||||||||     
T  7116040 ataagaagtaccttctcttgctcttgcttgtatgattctccttcttcctacaattatcaacagggaaggaaggtggtacaaggctttcaaaacaaatcaa 7115941  T
Q  194 agct 197  Q
    ||||    
T  7115940 agct 7115937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 64; E-Value: 3e-28
Query Start/End: Original strand, 87 - 202
Target Start/End: Complemental strand, 11987865 - 11987750
Alignment:
Q  87 ataatcaataagaagtaccgcttctttctcttgttcgtatgattctccttcttcctacaattatcaacagggaaggaaggtggtagaagactttcaacac 186  Q
    |||||||||||||||||||   ||||  ||||| | | ||||||| ||||||||||| ||||||||||||||||||| ||||||| ||||||| ||||||    
T  11987865 ataatcaataagaagtaccttctcttggtcttgcttgaatgattccccttcttcctagaattatcaacagggaaggagggtggtacaagacttccaacac 11987766  T
Q  187 aaatcatagcttcatc 202  Q
    ||||||||||||||||    
T  11987765 aaatcatagcttcatc 11987750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 60; E-Value: 8e-26
Query Start/End: Original strand, 87 - 202
Target Start/End: Complemental strand, 12006496 - 12006381
Alignment:
Q  87 ataatcaataagaagtaccgcttctttctcttgttcgtatgattctccttcttcctacaattatcaacagggaaggaaggtggtagaagactttcaacac 186  Q
    |||||||||||||||||||   |||| |||||| | ||| |||||||||||||| ||||||| |||||||||||||||||  ||| ||||||| ||||||    
T  12006496 ataatcaataagaagtaccttctcttgctcttgcttgtacgattctccttcttcgtacaattctcaacagggaaggaaggcagtacaagacttccaacac 12006397  T
Q  187 aaatcatagcttcatc 202  Q
    ||||||| ||||||||    
T  12006396 aaatcatcgcttcatc 12006381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 76 - 201
Target Start/End: Original strand, 10347520 - 10347639
Alignment:
Q  76 caaaaactcagataatcaataagaagtaccgcttctttctcttgttcgtatgattctccttcttcctacaattatcaacagggaaggaaggtggtagaag 175  Q
    ||||||||||| ||| ||||||||||||||      |||||||| | | |||||||||||||||||||| |||||||||||||||||||||||| | |||    
T  10347520 caaaaactcagttaaacaataagaagtacc------ttctcttgcttggatgattctccttcttcctacgattatcaacagggaaggaaggtgggacaag 10347613  T
Q  176 actttcaacacaaatcatagcttcat 201  Q
    |||| ||||||||| ||||| |||||    
T  10347614 acttccaacacaaaacatagtttcat 10347639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 80 - 195
Target Start/End: Original strand, 10352866 - 10352981
Alignment:
Q  80 aactcagataatcaataagaagtaccgcttctttctcttgttcgtatgattctccttcttcctacaattatcaacagggaaggaaggtggtagaagactt 179  Q
    ||||||| ||| ||||||||||||||  ||||  |||| | | ||| ||||||||| |||||||| |||||||||||||||| ||||||||| |||||||    
T  10352866 aactcagttaaacaataagaagtaccttttctcgctctcgcttgtaggattctcctgcttcctacgattatcaacagggaagtaaggtggtacaagactt 10352965  T
Q  180 tcaacacaaatcatag 195  Q
     |||||||||||||||    
T  10352966 ccaacacaaatcatag 10352981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 87 - 194
Target Start/End: Original strand, 9328364 - 9328470
Alignment:
Q  87 ataatcaataagaagtaccgcttctttctcttgttcgtatgattctccttcttcctacaattatcaacagggaaggaaggtggtagaagactttcaacac 186  Q
    |||||||| ||||||||||   |||| |||||| | ||| ||||||||||||||||| ||||||||||||||||||||||||||| ||||||| |||||     
T  9328364 ataatcaa-aagaagtaccttctcttgctcttgcttgtacgattctccttcttcctagaattatcaacagggaaggaaggtggtacaagacttccaacag 9328462  T
Q  187 aaatcata 194  Q
    ||| ||||    
T  9328463 aaaacata 9328470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 128 - 197
Target Start/End: Complemental strand, 8573863 - 8573794
Alignment:
Q  128 attctccttcttcctacaattatcaacagggaaggaaggtggtagaagactttcaacacaaatcatagct 197  Q
    |||||||| ||||||||||||||||||||||||| ||||||||| ||||||| ||||||||| |||||||    
T  8573863 attctcctccttcctacaattatcaacagggaagaaaggtggtacaagacttccaacacaaaacatagct 8573794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 137 - 192
Target Start/End: Complemental strand, 9065942 - 9065887
Alignment:
Q  137 cttcctacaattatcaacagggaaggaaggtggtagaagactttcaacacaaatca 192  Q
    ||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||    
T  9065942 cttcctacaattatcaacagggaaggaagttggtacaagactttcaacacaaatca 9065887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 108 - 195
Target Start/End: Original strand, 9274285 - 9274372
Alignment:
Q  108 ttctttctcttgttcgtatgattctccttcttcctacaattatcaacagggaaggaaggtggtagaagactttcaacacaaatcatag 195  Q
    ||||| |||||| | ||||||||||||||||||||| ||||||||||||||||||| ||||||| || |||| |||| ||||| ||||    
T  9274285 ttcttgctcttgcttgtatgattctccttcttcctagaattatcaacagggaaggagggtggtacaaaacttccaacccaaataatag 9274372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 77 - 190
Target Start/End: Complemental strand, 9295029 - 9294915
Alignment:
Q  77 aaaaactcagataatcaataa-gaagtaccgcttctttctcttgttcgtatgattctccttcttcctacaattatcaacagggaaggaaggtggtagaag 175  Q
    ||||||||||||||||||||| ||||||||   |||| |||||| |   | ||||||||||||| ||| |||||||||||||||||||||||| ||  ||    
T  9295029 aaaaactcagataatcaataaagaagtaccttctcttgctcttgcttaaacgattctccttcttactagaattatcaacagggaaggaaggtgctacgag 9294930  T
Q  176 actttcaacacaaat 190  Q
    |||||||||| ||||    
T  9294929 actttcaacataaat 9294915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 9061646 - 9061598
Alignment:
Q  1 tcctataataagaattcaatttaacctttagcatagagtttaactacat 49  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||    
T  9061646 tcctataacaagaattcaatttaacctttagcatagagtttaactacat 9061598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 114 - 194
Target Start/End: Original strand, 9320773 - 9320853
Alignment:
Q  114 ctcttgttcgtatgattctccttcttcctacaattatcaacagggaaggaaggtggtagaagactttcaacacaaatcata 194  Q
    |||||| | ||| |||||||||||||| || ||||||||||||||||||||||||| | ||||||| ||||||||| ||||    
T  9320773 ctcttgcttgtacgattctccttcttcttagaattatcaacagggaaggaaggtgggacaagacttccaacacaaaacata 9320853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 137 - 201
Target Start/End: Original strand, 9364442 - 9364506
Alignment:
Q  137 cttcctacaattatcaacagggaaggaaggtggtagaagactttcaacacaaatcatagcttcat 201  Q
    ||||||||||||||||||||| || |||||||||| ||||||  |||||||||||||||||||||    
T  9364442 cttcctacaattatcaacaggtaaagaaggtggtacaagactaccaacacaaatcatagcttcat 9364506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 9315681 - 9315727
Alignment:
Q  1 tcctataataagaattcaatttaacctttagcatagagtttaactac 47  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||    
T  9315681 tcctataataagaattcaatttgacctttagcatagagtttaactac 9315727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 9295125 - 9295077
Alignment:
Q  1 tcctataataagaattcaatttaacctttagcatagagtttaactacat 49  Q
    |||||||||||||||||||||| ||||||||||||||||||||| ||||    
T  9295125 tcctataataagaattcaatttgacctttagcatagagtttaaccacat 9295077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 127 - 195
Target Start/End: Original strand, 10335660 - 10335728
Alignment:
Q  127 gattctccttcttcctacaattatcaacagggaaggaaggtggtagaagactttcaacacaaatcatag 195  Q
    |||||| ||||||||||| |||||||||||| ||||||||||  | ||||||| |||||||||||||||    
T  10335660 gattctgcttcttcctacgattatcaacaggtaaggaaggtgaaacaagacttccaacacaaatcatag 10335728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 127 - 203
Target Start/End: Original strand, 10341153 - 10341229
Alignment:
Q  127 gattctccttcttcctacaattatcaacagggaaggaaggtggtagaagactttcaacacaaatcatagcttcatcc 203  Q
    |||||||||||||||||| ||| |||||||||||| |||||||||  | |||| ||||||| |||||||| ||||||    
T  10341153 gattctccttcttcctacgattgtcaacagggaagaaaggtggtactatacttccaacacacatcatagcatcatcc 10341229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 9 - 56
Target Start/End: Original strand, 9328260 - 9328307
Alignment:
Q  9 taagaattcaatttaacctttagcatagagtttaactacatgtatcat 56  Q
    |||||||||||||| |||||||||||||||||||||| ||| ||||||    
T  9328260 taagaattcaatttgacctttagcatagagtttaacttcatatatcat 9328307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 12013017 - 12012962
Alignment:
Q  1 tcctataataagaattcaatttaacctttagcatagagtttaactacatgtatcat 56  Q
    |||||||||||||||||||||| ||||||| ||| |||| ||||||||| ||||||    
T  12013017 tcctataataagaattcaatttgacctttaacatggagtctaactacatatatcat 12012962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 87 - 202
Target Start/End: Complemental strand, 12019266 - 12019151
Alignment:
Q  87 ataatcaataagaagtaccgcttctttctcttgttcgtatgattctccttcttcctacaattatcaacagggaaggaaggtggtagaagactttcaacac 186  Q
    |||||||||||||||||||   |||| |||||  | ||| ||||||||||| |   |  || |||| |||| ||||||||||||| ||||||| ||||||    
T  12019266 ataatcaataagaagtaccttctcttgctctttcttgtacgattctccttcgtatgattatcatcagcaggtaaggaaggtggtacaagacttccaacac 12019167  T
Q  187 aaatcatagcttcatc 202  Q
    ||||||| ||||||||    
T  12019166 aaatcatggcttcatc 12019151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 11987955 - 11987901
Alignment:
Q  1 tcctataataagaattcaatttaacctttagcatagagtttaactacatgtatca 55  Q
    |||||||||| ||||||||||| ||||||| |||| ||||||||||||| |||||    
T  11987955 tcctataataggaattcaatttgacctttaacataaagtttaactacatatatca 11987901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 8 - 56
Target Start/End: Complemental strand, 8573989 - 8573941
Alignment:
Q  8 ataagaattcaatttaacctttagcatagagtttaactacatgtatcat 56  Q
    ||||||||| ||||| ||||||||||||||||||||| |||| ||||||    
T  8573989 ataagaatttaatttgacctttagcatagagtttaaccacatatatcat 8573941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 9274224 - 9274272
Alignment:
Q  1 tcctataataagaattcaatttaacctttagcatagagtttaactacat 49  Q
    |||||||||||||||||||  | |||||||||||| |||||||||||||    
T  9274224 tcctataataagaattcaacatgacctttagcataaagtttaactacat 9274272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 112 - 203
Target Start/End: Original strand, 10371623 - 10371717
Alignment:
Q  112 ttctcttgttcgtatgattctccttcttcctacaattatcaacagggaa---ggaaggtggtagaagactttcaacacaaatcatagcttcatcc 203  Q
    |||||||| | |||||||||||||||||||||| |||||||||| || |   ||  ||||||| ||||||  ||||||||| |||||| ||||||    
T  10371623 ttctcttgcttgtatgattctccttcttcctaccattatcaacaaggtaagggggtggtggtacaagactaccaacacaaaccatagcatcatcc 10371717  T

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Target: chr2; HSP #29
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 9364279 - 9364334
Alignment:
Q  1 tcctataataagaattcaatttaacctttagcatagagtttaactacatgtatcat 56  Q
    ||||||||||||||||| |||| |||||||  ||||||||||| ||||| ||||||    
T  9364279 tcctataataagaattccatttgacctttaatatagagtttaagtacatatatcat 9364334  T

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Target: chr2; HSP #30
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 137 - 202
Target Start/End: Complemental strand, 9061487 - 9061422
Alignment:
Q  137 cttcctacaattatcaacagggaaggaaggtggtagaagactttcaacacaaatcatagcttcatc 202  Q
    |||| ||||| |||||||||||||| |||||| ||  |||||| ||||| ||| ||||||||||||    
T  9061487 cttcttacaagtatcaacagggaagaaaggtgatacgagacttccaacataaaacatagcttcatc 9061422  T

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Target: chr2; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 49
Target Start/End: Complemental strand, 9284671 - 9284627
Alignment:
Q  5 ataataagaattcaatttaacctttagcatagagtttaactacat 49  Q
    |||||||||||||||||| |||||||  ||| |||||||||||||    
T  9284671 ataataagaattcaatttgacctttaatataaagtttaactacat 9284627  T

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Target: chr2; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 45
Target Start/End: Original strand, 9320637 - 9320677
Alignment:
Q  5 ataataagaattcaatttaacctttagcatagagtttaact 45  Q
    ||||||| |||||||||| |||| |||||||||||||||||    
T  9320637 ataataaaaattcaatttgacctatagcatagagtttaact 9320677  T

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Target: scaffold0667 (Bit Score: 51; Significance: 2e-20; HSPs: 2)
Name: scaffold0667
Description:

Target: scaffold0667; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 123 - 197
Target Start/End: Original strand, 4253 - 4327
Alignment:
Q  123 gtatgattctccttcttcctacaattatcaacagggaaggaaggtggtagaagactttcaacacaaatcatagct 197  Q
    ||||||||||||||||| ||| ||||||||||||| ||||||||||||| ||||||| ||||||||||| |||||    
T  4253 gtatgattctccttcttactagaattatcaacaggaaaggaaggtggtacaagacttccaacacaaatcttagct 4327  T

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Target: scaffold0667; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 4107 - 4152
Alignment:
Q  1 tcctataataagaattcaatttaacctttagcatagagtttaacta 46  Q
    |||||||||||||||||||||| |  ||||||| ||||||||||||    
T  4107 tcctataataagaattcaatttgagttttagcacagagtttaacta 4152  T

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Target: chr3 (Bit Score: 50; Significance: 8e-20; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 131 - 196
Target Start/End: Original strand, 37462273 - 37462338
Alignment:
Q  131 ctccttcttcctacaattatcaacagggaaggaaggtggtagaagactttcaacacaaatcatagc 196  Q
    |||||||||||||||||||||||||||||| | ||||| || ||||||||||||||||||||||||    
T  37462273 ctccttcttcctacaattatcaacagggaaaggaggtgatacaagactttcaacacaaatcatagc 37462338  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 37462132 - 37462188
Alignment:
Q  1 tcctataataagaattcaatttaacc-tttagcatagagtttaactacatgtatcat 56  Q
    |||||||| ||||||||||||| ||| |||||||||||  |||||||||| ||||||    
T  37462132 tcctataacaagaattcaatttgaccttttagcatagaacttaactacatatatcat 37462188  T

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Target: chr8 (Bit Score: 45; Significance: 8e-17; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 41967202 - 41967150
Alignment:
Q  1 tcctataataagaattcaatttaacctttagcatagagtttaactacatgtat 53  Q
    |||||||||||||||||||||||||||||| |||||||||||| |||||||||    
T  41967202 tcctataataagaattcaatttaacctttaacatagagtttaagtacatgtat 41967150  T

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Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 137 - 202
Target Start/End: Complemental strand, 41967036 - 41966971
Alignment:
Q  137 cttcctacaattatcaacagggaaggaaggtggtagaagactttcaacacaaatcatagcttcatc 202  Q
    |||| |||||||| ||||||||||||||||||||| ||||||| ||||||||| ||| ||||||||    
T  41967036 cttcttacaattaacaacagggaaggaaggtggtacaagacttccaacacaaaacatggcttcatc 41966971  T

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Target: chr1 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 155 - 201
Target Start/End: Complemental strand, 29468090 - 29468044
Alignment:
Q  155 agggaaggaaggtggtagaagactttcaacacaaatcatagcttcat 201  Q
    ||||||||||||||||| ||||||| |||||||||||||||||||||    
T  29468090 agggaaggaaggtggtacaagacttccaacacaaatcatagcttcat 29468044  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 156 - 198
Target Start/End: Complemental strand, 29453613 - 29453571
Alignment:
Q  156 gggaaggaaggtggtagaagactttcaacacaaatcatagctt 198  Q
    |||||||||||||| | ||||||| ||||||||||||||||||    
T  29453613 gggaaggaaggtggcacaagacttccaacacaaatcatagctt 29453571  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 56 - 105
Target Start/End: Complemental strand, 29453692 - 29453643
Alignment:
Q  56 tgaaattagcttataaatagcaaaaactcagataatcaataagaagtacc 105  Q
    |||||||| |||||| | |||||||||||||||||| |||||| ||||||    
T  29453692 tgaaattaacttatacagagcaaaaactcagataataaataaggagtacc 29453643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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