View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3586_low_5 (Length: 433)
Name: NF3586_low_5
Description: NF3586
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3586_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 356; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 19 - 418
Target Start/End: Original strand, 36649764 - 36650169
Alignment:
| Q |
19 |
aaagatatgcaacttctgttagaaaatcttcaagatcatatgcatatatgcttgta--------tggaaatgattatgctcatgcaaattatgttatggc |
110 |
Q |
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| T |
36649764 |
aaagatatgcaacttctgttagaaaatcttcaagatcatatgcatatatgcttgtagtgcagtatggaaatgattatgctcatgcaaattatgttatggc |
36649863 |
T |
|
| Q |
111 |
acaaaatgctaaacaatatgtatatgaacctcttgtatctttccttaagcttcaatcatatctaaagaacatacagtagaaatttttgaaattactgttt |
210 |
Q |
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| T |
36649864 |
acaaaatgctaaacaatatgtatatgaacctattgtatctttccttaagcttcaatcatatctaaagaacatacagtagaaatttttgaaattactgttt |
36649963 |
T |
|
| Q |
211 |
ccatatcaaagaaattcatagtacagaaatttcaatttctaaacatacagaagatacattgttactgaatgaaattccaatatagttttctgttttgtag |
310 |
Q |
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| T |
36649964 |
ccatatcaaagaaattcatagtacagaaatttcaatttgtaaacatacagaagatacattgttactgaatgaaattccaatatag--ttctgttttgtag |
36650061 |
T |
|
| Q |
311 |
acatccctagaagaatttaatagcttgcaacacatgactattaattttgtgtgtgaaacacaaatcatacgcgccatcggccaaaactgtgagcttcaac |
410 |
Q |
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| T |
36650062 |
acatccctagaagaatttaatagcttgcaacacatgactattaattttgtgtgtgaaacacaaatcgtacgcgccatcggccaaaactgtgagcttcaac |
36650161 |
T |
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| Q |
411 |
tcttcatc |
418 |
Q |
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| T |
36650162 |
tcttcatc |
36650169 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 77 - 181
Target Start/End: Complemental strand, 36643796 - 36643692
Alignment:
| Q |
77 |
gaaatgattatgctcatgcaaattatgttatggcacaaaatgctaaacaatatgtatatgaacctcttgtatctttccttaagcttcaatcatatctaaa |
176 |
Q |
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||||||| |||||||||||| ||||||||||||| |||| |||||||||| ||||||||||||||||| |||||||| |||||||||||| ||| |||| |
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| T |
36643796 |
gaaatgactatgctcatgcagattatgttatggctcaaagtgctaaacaagatgtatatgaacctcttatatctttctttaagcttcaatgatagttaaa |
36643697 |
T |
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| Q |
177 |
gaaca |
181 |
Q |
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||||| |
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| T |
36643696 |
gaaca |
36643692 |
T |
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