View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3587_high_10 (Length: 250)
Name: NF3587_high_10
Description: NF3587
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3587_high_10 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 234; Significance: 1e-129; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 9 - 250
Target Start/End: Complemental strand, 50475325 - 50475084
Alignment:
| Q |
9 |
agcagagacatactcatgattcaaaacttaaaagttactcaaaatttctcaactaattatccagtgaaatggaagagaccacattgcccatgtaaaatta |
108 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
50475325 |
agcaaagacatactcatgattcaaaacttaaaagttactcaaaatttctcaactaattatccagtgaaatggaagagaccacattgcccgtgtaaaatta |
50475226 |
T |
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| Q |
109 |
tataagaaattaaaaatggaagatttatgaaactggatagcacccacttcttttaaaatagcaccgtccagataagtcttggtatgaacatggaaacggc |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50475225 |
tataagaaattaaaaatggaagatttatgaaactggatagcacccacttcttttaaaatagcaccgtccagataagtcttggtatgaacatggaaacggc |
50475126 |
T |
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| Q |
209 |
catcattcttggtttcctgcagcgaatgtccacgcatagctt |
250 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |
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| T |
50475125 |
catcattcttggtttcctgcagcgaatgtccacgcatagctt |
50475084 |
T |
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