View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3587_high_13 (Length: 239)
Name: NF3587_high_13
Description: NF3587
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3587_high_13 |
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Alignment Details
Target: chr4 (Bit Score: 214; Significance: 1e-117; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 10585133 - 10585354
Alignment:
| Q |
1 |
cacaaacccctttgtttgaggaaaagtgaaaagtgtttgatcagagttgagaaatcctcttccaccaaccaagtccttgaaatattggttatcgaaaatc |
100 |
Q |
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| T |
10585133 |
cacaaacccctttgtttgaggaaaagtgaaaagtgtttgatcagagttgagaaatcctcttccaccaaccaagtccttgaaatattggttatcgaaaatc |
10585232 |
T |
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| Q |
101 |
acaggagttgcatcaaggtttcctgtcttattttgatcaacatctcgaggacatagcttgtcaagctctgtcctaaatacaggatcaattgcagggtcag |
200 |
Q |
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| T |
10585233 |
acaggagttgcatcaaggtttcctgtcttattttgatcaacatctcgaggacatagcttgtcaagctctgccctaaatacatgatcaattgcagggtcag |
10585332 |
T |
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| Q |
201 |
gctttccgctaccggattgatt |
222 |
Q |
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| T |
10585333 |
gctttccgctaccggattgatt |
10585354 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 5 - 222
Target Start/End: Complemental strand, 10500700 - 10500483
Alignment:
| Q |
5 |
aacccctttgtttgaggaaaagtgaaaagtgtttgatcagagttgagaaatcctcttccaccaaccaagtccttgaaatattggttatcgaaaatcacag |
104 |
Q |
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| T |
10500700 |
aacccttttgtttgagggtaagtgaaaagtgtttgatcagagttgagaaatcctcttccaccaaccaagtccttgaaatattggttatcgaaaatcacgg |
10500601 |
T |
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| Q |
105 |
gagttgcatcaaggtttcctgtcttattttgatcaacatctcgaggacatagcttgtcaagctctgtcctaaatacaggatcaattgcagggtcaggctt |
204 |
Q |
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| T |
10500600 |
gagttgagtcaaggttccctgtcttattttggtcaacatctagtgggcatagcttgtcaagctctagtctaaaagcaggatcaagtgcagggtcgggttt |
10500501 |
T |
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| Q |
205 |
tccgctaccggattgatt |
222 |
Q |
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| T |
10500500 |
tccactacctgattgatt |
10500483 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 76 - 210
Target Start/End: Original strand, 10578638 - 10578772
Alignment:
| Q |
76 |
cttgaaatattggttatcgaaaatcacaggagttgcatcaaggtttcctgtcttattttgatcaacatctcgaggacatagcttgtcaagctctgtccta |
175 |
Q |
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|||||||||||||||||| |||| | ||||||| ||||||||| |||||| ||||||||||||||| | |||||| ||||||||||||| | || |
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| T |
10578638 |
cttgaaatattggttatcaaaaacgaacggagttgaatcaaggttcaatgtcttgttttgatcaacatctagtggacattgcttgtcaagctcagcttta |
10578737 |
T |
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| Q |
176 |
aatacaggatcaattgcagggtcaggctttccgct |
210 |
Q |
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| T |
10578738 |
aaaccaggatcaattgtcgggtcaggtttttcgct |
10578772 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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