View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3587_high_15 (Length: 235)
Name: NF3587_high_15
Description: NF3587
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3587_high_15 |
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Alignment Details
Target: chr4 (Bit Score: 216; Significance: 1e-119; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 1 - 220
Target Start/End: Complemental strand, 50474976 - 50474757
Alignment:
| Q |
1 |
aaattataacacttgcatgctcctgctaagttgcagaaaatattgattctagtaactgcaccagacaatcttcaaactccgaggtaaaataattggtagc |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
50474976 |
aaattataacacttgcatgctcctgctaagttgcagaaaatattgattctagtaactgcaccagagaatcttcaaactccgaggtaaaataattggtagc |
50474877 |
T |
|
| Q |
101 |
ctactccataggaaattacaaacctctgccttaatttcgtcgatgtttatactgtaattgtggcccttttgcataatattgtatcgattgtgattttgca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50474876 |
ctactccataggaaattacaaacctctgccttaatttcgtcgatgtttatactgtaattgtggcccttttgcataatattgtatcgattgtgattttgca |
50474777 |
T |
|
| Q |
201 |
agacaattattggtataagc |
220 |
Q |
| |
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|||||||||||||||||||| |
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| T |
50474776 |
agacaattattggtataagc |
50474757 |
T |
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