View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3587_high_2 (Length: 773)
Name: NF3587_high_2
Description: NF3587
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3587_high_2 |
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Alignment Details
Target: chr8 (Bit Score: 702; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 702; E-Value: 0
Query Start/End: Original strand, 8 - 755
Target Start/End: Complemental strand, 35489946 - 35489199
Alignment:
| Q |
8 |
cagcacagatggaacaaaacacattacaatcaaaccaaagaatccaagtggaaccttataaggtcttttcattgtagggaattttttcctcaacttaagg |
107 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35489946 |
cagcgcagatggaacaaaacacattacaatcaaaccaaagaatccaagtggaaccttataaggtcttttcattgtagggaattttttcctcaacttaagg |
35489847 |
T |
|
| Q |
108 |
aaagaagcaaactccaaaagcatccctaaactatacaaaaaattaacagtggatataatctctgtaaaactnnnnnnngacataccaagtgatattattg |
207 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
35489846 |
aaagaagcaaactccaaaagcatccctaaactatacaaaaaattaacagtggatataatctctgtaaaactaaaaaaagacataccaagtgatattattg |
35489747 |
T |
|
| Q |
208 |
ttgaaatcaaaattgccatccaaggtgtgttaaacaactttgacctttcaccaaatatttttggtatgaatcccaagtcagacatacctaaaagttgata |
307 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35489746 |
ttgaaatcaaaattgccatccaaggtgtgttaaacaactttgacctttcaccaaatatttttggtatgaatcccaagtcagacatacctaaaagttgata |
35489647 |
T |
|
| Q |
308 |
tgcagcactacttaattgagcttcaaataatccaataattgacaacacagcaccaatttccatccaatatttcaaccaattcccagcaatcaaaccagcc |
407 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35489646 |
tgcagcactacttaattgagcttcaaataatccaataattgacaacacagcaccaatttccatccaatatttcaaccaattcccagcaatcaaaccagcc |
35489547 |
T |
|
| Q |
408 |
acatgtgcaaaatacccaccaacccaaacttcttgatcaagtggcatagcaccagtagtagccaacaaaggaattatataacccaaacaagttaacaatc |
507 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35489546 |
acatgtgcaaaatacccaccaacccaaacttcttgatcaagtggcatagcaccagtagtagccaacaaaggaattatataacccaaacaagttaacaatc |
35489447 |
T |
|
| Q |
508 |
cagcaaataacaaagcttttggaaaagtcttatgtggctcttcaacttcaccagctaaagtactagcactatcccaaaaattcaagttccaaaaaatagt |
607 |
Q |
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| T |
35489446 |
cagcaaataacaaagcttttggaaaagtcttatgtggctcttcaacttcaccagctaaagtactagcactatcccaaaaattcaagttccaaaaaatagt |
35489347 |
T |
|
| Q |
608 |
attgnnnnnnngcgtccaatctttttccacaccctcttgtcctaaacttaaccatctactaggatcaattttaggcactgaaatcaaagacattaacaca |
707 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35489346 |
attgaaaaaaagcgtccaatctttttccacaccctcttgtcctaaacttaaccatctactaggatcaattttaggcactgaaatcaaagacattaacaca |
35489247 |
T |
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| Q |
708 |
aagggtaaaagggaaataacacctaaaccaactgcagtataaccaact |
755 |
Q |
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| T |
35489246 |
aagggtaaaagggaaataacacctaaaccaactgcagtataaccaact |
35489199 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 50; Significance: 3e-19; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 528 - 601
Target Start/End: Original strand, 27191177 - 27191250
Alignment:
| Q |
528 |
ggaaaagtcttatgtggctcttcaacttcaccagctaaagtactagcactatcccaaaaattcaagttccaaaa |
601 |
Q |
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|||||||| || | ||| ||||||||||||||||||||||||||| || ||||||||||||||||||||||||| |
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| T |
27191177 |
ggaaaagttttctttggttcttcaacttcaccagctaaagtactaacattatcccaaaaattcaagttccaaaa |
27191250 |
T |
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