View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3587_high_7 (Length: 320)
Name: NF3587_high_7
Description: NF3587
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3587_high_7 |
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Alignment Details
Target: chr7 (Bit Score: 283; Significance: 1e-158; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 1 - 312
Target Start/End: Original strand, 4921179 - 4921490
Alignment:
| Q |
1 |
tcttcaattgtgtaactcctagtacagatacaactacaaaatgtgttgaatcatgaaatattatgttgaattactgtccaataatatcaataaaccataa |
100 |
Q |
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| T |
4921179 |
tcttcaattgtgtaactcctagtacagatacaactacaaaatgtgttgaatcatgaaatattatgttgaattactgtccaataatatcaataaaccataa |
4921278 |
T |
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| Q |
101 |
aaaccatacattagaatcagttttagcttagaaaatggtttgatacttacattttacccatgatgtcattttttcccaacgtgtttccgtcgttttgctt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
4921279 |
aaaccatacattagaatcagttttagcttagaaaatggtttgatacttacattttacccatgatgtcattttttcccaacgtgtgtccgtcgttttgctt |
4921378 |
T |
|
| Q |
201 |
cttttcatgttttatgatgaaatgtaggcttgannnnnnngtacctcccttggttatcattggctatcaagcggaattcgtgtgggaaatatgcttgcaa |
300 |
Q |
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| T |
4921379 |
cttttcatgttttatgatgaaatgtaggcttgatttttttgtacttcccttggttatcattggctatcaagcggaattcgtgtgggaaatatgcttgcaa |
4921478 |
T |
|
| Q |
301 |
aatactcaaagc |
312 |
Q |
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|||||||||||| |
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| T |
4921479 |
aatactcaaagc |
4921490 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 119; E-Value: 9e-61
Query Start/End: Original strand, 113 - 312
Target Start/End: Original strand, 4927510 - 4927732
Alignment:
| Q |
113 |
agaatcagttttagcttagaaaatggtttgatacttacattttacccatgatgtca-ttttttcccaacgtgtttccgtcgttttgcttctt-------- |
203 |
Q |
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| T |
4927510 |
agaatcagttttagcttagaaaatggtttgatacttacattttacccatgatgtcatttttttcccaacgtgtttccgtcgttttgcttcttttagttca |
4927609 |
T |
|
| Q |
204 |
--------------ttcatgttttatgatgaaatgtaggcttgannnnnnngtacctcccttggttatcattggctatcaagcggaattcgtgtgggaaa |
289 |
Q |
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|||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4927610 |
ttttctaagaggcattcatgttttatgatgaaatgtaggcttgatttttttgtacttcccttggttatcattggctatcaagcggaattcgtgtgggaaa |
4927709 |
T |
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| Q |
290 |
tatgcttgcaaaatactcaaagc |
312 |
Q |
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||||||||||||||||||||||| |
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| T |
4927710 |
tatgcttgcaaaatactcaaagc |
4927732 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 4927446 - 4927501
Alignment:
| Q |
1 |
tcttcaattgtgtaactcctagtacagatacaactacaaaatgtgttgaatcatga |
56 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||||||||| |||| |
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| T |
4927446 |
tcttcaattgtgtaactcctagtacaggtacaactacaaaatgtgttgaattatga |
4927501 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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