View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3587_low_1 (Length: 786)

Name: NF3587_low_1
Description: NF3587
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3587_low_1
NF3587_low_1
[»] chr7 (11 HSPs)
chr7 (1-786)||(47426667-47427453)
chr7 (148-199)||(36598310-36598361)
chr7 (139-218)||(33645895-33645975)
chr7 (148-191)||(36537973-36538016)
chr7 (159-215)||(6977492-6977548)
chr7 (148-191)||(27626085-27626128)
chr7 (137-188)||(39591463-39591514)
chr7 (137-175)||(28520990-28521028)
chr7 (148-217)||(25670522-25670591)
chr7 (140-181)||(30134106-30134147)
chr7 (137-198)||(48157075-48157136)
[»] chr5 (12 HSPs)
chr5 (133-199)||(32172703-32172769)
chr5 (152-218)||(29336699-29336765)
chr5 (11-106)||(18704083-18704179)
chr5 (148-196)||(12242667-12242715)
chr5 (137-181)||(38047851-38047895)
chr5 (131-174)||(11457146-11457189)
chr5 (35-117)||(16889686-16889769)
chr5 (139-174)||(18700440-18700475)
chr5 (148-191)||(37611177-37611220)
chr5 (148-191)||(37787907-37787950)
chr5 (137-175)||(40499704-40499742)
chr5 (7-63)||(35095874-35095931)
[»] chr8 (20 HSPs)
chr8 (133-181)||(30987963-30988011)
chr8 (148-218)||(30191076-30191146)
chr8 (133-181)||(27645954-27646002)
chr8 (133-181)||(31875567-31875615)
chr8 (133-173)||(43709312-43709352)
chr8 (139-218)||(6950378-6950457)
chr8 (148-191)||(37740389-37740432)
chr8 (133-199)||(29169890-29169956)
chr8 (9-77)||(34563174-34563244)
chr8 (148-190)||(40071814-40071856)
chr8 (137-175)||(45071428-45071466)
chr8 (134-191)||(11415205-11415262)
chr8 (7-63)||(14482124-14482181)
chr8 (149-218)||(25881350-25881419)
chr8 (139-180)||(26479841-26479882)
chr8 (139-180)||(30259170-30259211)
chr8 (148-181)||(30600321-30600354)
chr8 (7-86)||(35453690-35453771)
chr8 (151-188)||(40280191-40280228)
chr8 (7-63)||(40280296-40280353)
[»] chr3 (14 HSPs)
chr3 (133-191)||(25182949-25183007)
chr3 (128-181)||(31403063-31403116)
chr3 (139-199)||(24281103-24281163)
chr3 (9-61)||(16790181-16790234)
chr3 (139-199)||(37273190-37273250)
chr3 (148-191)||(2321243-2321286)
chr3 (148-211)||(43115121-43115184)
chr3 (151-217)||(27294414-27294480)
chr3 (148-217)||(50004717-50004787)
chr3 (148-181)||(2606282-2606315)
chr3 (139-196)||(11039296-11039353)
chr3 (42-106)||(37689431-37689496)
chr3 (148-181)||(40880920-40880953)
chr3 (139-180)||(49845513-49845554)
[»] chr1 (15 HSPs)
chr1 (137-199)||(15581308-15581370)
chr1 (148-199)||(23373267-23373318)
chr1 (7-100)||(52286600-52286695)
chr1 (135-176)||(17631079-17631120)
chr1 (148-188)||(49521770-49521810)
chr1 (148-191)||(4363596-4363639)
chr1 (140-199)||(4549495-4549554)
chr1 (139-218)||(4868456-4868534)
chr1 (133-180)||(11560535-11560582)
chr1 (5-63)||(16982027-16982086)
chr1 (139-218)||(32515376-32515455)
chr1 (135-174)||(37175903-37175942)
chr1 (151-198)||(37272549-37272596)
chr1 (10-63)||(36641800-36641854)
chr1 (150-191)||(4033979-4034020)
[»] chr2 (12 HSPs)
chr2 (7-63)||(28803597-28803654)
chr2 (137-174)||(6561391-6561428)
chr2 (137-218)||(28803465-28803546)
chr2 (133-181)||(4550797-4550845)
chr2 (8-105)||(17952749-17952848)
chr2 (137-175)||(14316123-14316161)
chr2 (137-191)||(34651998-34652052)
chr2 (135-180)||(1742005-1742050)
chr2 (149-218)||(14277828-14277897)
chr2 (148-181)||(15120248-15120281)
chr2 (153-214)||(19978017-19978078)
chr2 (7-63)||(43431535-43431592)
[»] chr6 (14 HSPs)
chr6 (139-191)||(2460113-2460165)
chr6 (137-200)||(32917251-32917314)
chr6 (7-63)||(4248880-4248937)
chr6 (137-218)||(27857412-27857493)
chr6 (149-181)||(34939579-34939611)
chr6 (137-175)||(1669776-1669814)
chr6 (153-199)||(2455683-2455729)
chr6 (148-218)||(2455875-2455945)
chr6 (137-175)||(6310228-6310266)
chr6 (149-191)||(24782257-24782299)
chr6 (135-200)||(1403048-1403113)
chr6 (9-66)||(10749316-10749373)
chr6 (148-181)||(31594356-31594389)
chr6 (148-181)||(32577958-32577991)
[»] chr4 (16 HSPs)
chr4 (139-191)||(27123314-27123366)
chr4 (133-181)||(49893366-49893414)
chr4 (137-199)||(2996627-2996689)
chr4 (139-199)||(6428074-6428134)
chr4 (150-218)||(25717660-25717728)
chr4 (133-181)||(27725264-27725312)
chr4 (13-63)||(4071811-4071861)
chr4 (133-191)||(6987703-6987761)
chr4 (128-218)||(32071913-32071998)
chr4 (43-100)||(35900305-35900363)
chr4 (138-172)||(46175658-46175692)
chr4 (28-66)||(47800574-47800612)
chr4 (137-191)||(50799992-50800046)
chr4 (140-181)||(23676753-23676794)
chr4 (35-103)||(24929444-24929513)
chr4 (140-181)||(53155317-53155358)


Alignment Details
Target: chr7 (Bit Score: 718; Significance: 0; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 718; E-Value: 0
Query Start/End: Original strand, 1 - 786
Target Start/End: Complemental strand, 47427453 - 47426667
Alignment:
Q  1 atacgagcttatcatataagttcttatatataattatttcaataacaaaagataaactaaagttaacaattttcatagaagttataagctattttcataa 100  Q
    ||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47427453 atacgagcttatcata--agttcttatatataattatttcaataacaaaagataaactaaagttaacaattttcatagaagttataagctattttcataa 47427356  T
Q  101 actattcttgagagtttnnnnnnnnnngcttgaaatagcttatagagatgtcataagttgtttccataagctctctcaaaccatctcacaattgcttatt 200  Q
    |||||||||||||||||          |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47427355 actattcttgagagtttaaaaaaataagcttgaaatagcttatagagatgtcataagttgtttccataagctctctcaaaccatctcacaattgcttatt 47427256  T
Q  201 tcgatagataaactcaaaatgagttattttaaataggtttagtttatacatagacacttcttatatgataagtggtcatgacataaacacaagttatttg 300  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  47427255 tcgatagataaactcaaaatgagttattttaaataggtttagtttatacatagacacttcttatatgataagtgctcatgacataaacacaagttatttg 47427156  T
Q  301 ttatttatctaaacaaagatgttattcatttatctatcaataactatatataatatggttattaattgttgcatagtattcaaagaatatgagcatggaa 400  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  47427155 ttatttatctaaacaaagatgttattcatttatatatcaataactatatataatatggttattaattgttgaatagtattcaaagaatatgagcatggaa 47427056  T
Q  401 gaaatgttggaggttatgagaagtagaagtggtccactagatgttaaaagcagaaagtatgactcaatggcatattattcaagaagtcgatcaatttcaa 500  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47427055 gaaatgttggaggttatgagaagtagaagtggtccactagatgttaaaagcagaaagtatgactcaatggcatattattcaagaagtcgatcaatttcaa 47426956  T
Q  501 aacgagaaaatcaattg---aagaagaagaatcacatgaataataatcctagaacaattctcacagcaccaaacagcccagaaaagtactacagtgacat 597  Q
    |||||||||||||||||   |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47426955 aacgagaaaatcaattgaaaaagaaggagaatcacatgaataataatcctagaacaattctcacagcaccaaacagcccagaaaagtactacagtgacat 47426856  T
Q  598 gattgaatatatggacccaacaaccttatcaacatctcagcgtcacattattgtgcctcctagaaaatcatggtcatcaccaagttacatgaacaagaca 697  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47426855 gattgaatatatggacccaacaaccttatcaacatctcagcgtcacattattgtgcctcctagaaaatcatggtcatcaccaagttacatgaacaagaca 47426756  T
Q  698 gaatcttctagggcaaaaacaaggtctattagtgaaccaagacaaagacctaaacaaggaacagaacagagaaacaagtctatagaatt 786  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47426755 gaatcttctagggcaaaaacaaggtctattagtgaaccaagacaaagacctaaacaaggaacagaacagagaaacaagtctatagaatt 47426667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 148 - 199
Target Start/End: Complemental strand, 36598361 - 36598310
Alignment:
Q  148 atgtcataagttgtttccataagctctctcaaaccatctcacaattgcttat 199  Q
    |||||||||| ||||||||||||||||||||||| |||||||||||||||||    
T  36598361 atgtcataagatgtttccataagctctctcaaacaatctcacaattgcttat 36598310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 139 - 218
Target Start/End: Complemental strand, 33645975 - 33645895
Alignment:
Q  139 cttatagagatgtcataagttgtttccataagctctctcaaacca-tctcacaattgcttatttcgatagataaactcaaa 218  Q
    |||||||| |||||||||||||||||||||||||||||| ||||| |||||||| |  |||  || |||||||||||||||    
T  33645975 cttatagacatgtcataagttgtttccataagctctctccaaccagtctcacaagtttttacgtcaatagataaactcaaa 33645895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 148 - 191
Target Start/End: Original strand, 36537973 - 36538016
Alignment:
Q  148 atgtcataagttgtttccataagctctctcaaaccatctcacaa 191  Q
    ||||||||||||||||||||||| |||||||||| |||||||||    
T  36537973 atgtcataagttgtttccataagttctctcaaacaatctcacaa 36538016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 159 - 215
Target Start/End: Original strand, 6977492 - 6977548
Alignment:
Q  159 tgtttccataagctctctcaaaccatctcacaattgcttatttcgatagataaactc 215  Q
    ||||||||||||||| ||||||| ||||||||| |||||||  | ||||||||||||    
T  6977492 tgtttccataagctcactcaaacaatctcacaaatgcttatgccaatagataaactc 6977548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 148 - 191
Target Start/End: Complemental strand, 27626128 - 27626085
Alignment:
Q  148 atgtcataagttgtttccataagctctctcaaaccatctcacaa 191  Q
    |||||||||| |||||||||||||| |||||||| |||||||||    
T  27626128 atgtcataagctgtttccataagctttctcaaacaatctcacaa 27626085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 137 - 188
Target Start/End: Complemental strand, 39591514 - 39591463
Alignment:
Q  137 agcttatagagatgtcataagttgtttccataagctctctcaaaccatctca 188  Q
    ||||||| || |||||||| | ||||||||||||||||||||||| ||||||    
T  39591514 agcttatggatatgtcataggatgtttccataagctctctcaaacaatctca 39591463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 137 - 175
Target Start/End: Complemental strand, 28521028 - 28520990
Alignment:
Q  137 agcttatagagatgtcataagttgtttccataagctctc 175  Q
    |||||||||| ||||||||||||||||||||||| ||||    
T  28521028 agcttatagacatgtcataagttgtttccataagttctc 28520990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 148 - 217
Target Start/End: Complemental strand, 25670591 - 25670522
Alignment:
Q  148 atgtcataagttgtttccataagctctctcaaaccatctcacaattgcttatttcgatagataaactcaa 217  Q
    |||||||||||||||| |||||| | ||||||||  ||||||||  |||||| || |||||||| |||||    
T  25670591 atgtcataagttgttttcataagttttctcaaacagtctcacaagagcttatgtcaatagataagctcaa 25670522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 140 - 181
Target Start/End: Original strand, 30134106 - 30134147
Alignment:
Q  140 ttatagagatgtcataagttgtttccataagctctctcaaac 181  Q
    ||||||| |||||||||| |||||||||||||| ||||||||    
T  30134106 ttatagacatgtcataagctgtttccataagctttctcaaac 30134147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 137 - 198
Target Start/End: Complemental strand, 48157136 - 48157075
Alignment:
Q  137 agcttatagagatgtcataagttgtttccataagctctctcaaaccatctcacaattgctta 198  Q
    ||||||| || ||| ||||||||||||| |||||||||| |||||  |||||||| ||||||    
T  48157136 agcttatggacatggcataagttgtttctataagctctcccaaacagtctcacaaatgctta 48157075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 43; Significance: 0.000000000000005; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 133 - 199
Target Start/End: Original strand, 32172703 - 32172769
Alignment:
Q  133 aaatagcttatagagatgtcataagttgtttccataagctctctcaaaccatctcacaattgcttat 199  Q
    |||| |||||| || |||||||||||||||||||||||||||| ||||| ||||||||| |||||||    
T  32172703 aaatggcttatggacatgtcataagttgtttccataagctctcccaaactatctcacaagtgcttat 32172769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 152 - 218
Target Start/End: Original strand, 29336699 - 29336765
Alignment:
Q  152 cataagttgtttccataagctctctcaaaccatctcacaattgcttatttcgatagataaactcaaa 218  Q
    |||||||||||||||||||||||||||| |  |||||||| ||||| |  | |||||||||||||||    
T  29336699 cataagttgtttccataagctctctcaatcagtctcacaagtgcttttgccaatagataaactcaaa 29336765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 11 - 106
Target Start/End: Complemental strand, 18704179 - 18704083
Alignment:
Q  11 atcatataagttcttatatataa-ttatttcaataacaaaagataaactaaagttaa-caattttcatagaagttataagctattttcataaactatt 106  Q
    ||||||||||||||||| ||||| ||||||| ||||||||||||||| |||||| || | ||||| ||| ||| |||||| | ||||||||| |||||    
T  18704179 atcatataagttcttatgtataagttatttctataacaaaagataaa-taaagtcaagctatttttatataagctataagttgttttcataagctatt 18704083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 148 - 196
Target Start/End: Complemental strand, 12242715 - 12242667
Alignment:
Q  148 atgtcataagttgtttccataagctctctcaaaccatctcacaattgct 196  Q
    |||||||||||| ||||||||||||||||||||  ||||||||| ||||    
T  12242715 atgtcataagttttttccataagctctctcaaataatctcacaaatgct 12242667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 137 - 181
Target Start/End: Complemental strand, 38047895 - 38047851
Alignment:
Q  137 agcttatagagatgtcataagttgtttccataagctctctcaaac 181  Q
    ||||||| || |||||||||||||||||||||||||||| |||||    
T  38047895 agcttatggacatgtcataagttgtttccataagctctcccaaac 38047851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 131 - 174
Target Start/End: Original strand, 11457146 - 11457189
Alignment:
Q  131 tgaaatagcttatagagatgtcataagttgtttccataagctct 174  Q
    ||||| ||||||| || |||||||||||||||||||||||||||    
T  11457146 tgaaacagcttatggacatgtcataagttgtttccataagctct 11457189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 35 - 117
Target Start/End: Original strand, 16889686 - 16889769
Alignment:
Q  35 tatttcaataacaaaagataaactaaagt-taacaattttcatagaagttataagctattttcataaactattcttgagagttt 117  Q
    |||||| ||||||||||||||||| ||||  |||  |||| ||||||| |||||||| ||||||||| |||| || ||||||||    
T  16889686 tatttccataacaaaagataaacttaagtcaaactgtttttatagaagctataagctgttttcataagctatgctagagagttt 16889769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 139 - 174
Target Start/End: Original strand, 18700440 - 18700475
Alignment:
Q  139 cttatagagatgtcataagttgtttccataagctct 174  Q
    |||||||| |||||||||||||||||||||||||||    
T  18700440 cttatagacatgtcataagttgtttccataagctct 18700475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 148 - 191
Target Start/End: Complemental strand, 37611220 - 37611177
Alignment:
Q  148 atgtcataagttgtttccataagctctctcaaaccatctcacaa 191  Q
    |||||| ||||||||| ||||||||||||||||| |||||||||    
T  37611220 atgtcacaagttgttttcataagctctctcaaacaatctcacaa 37611177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 148 - 191
Target Start/End: Complemental strand, 37787950 - 37787907
Alignment:
Q  148 atgtcataagttgtttccataagctctctcaaaccatctcacaa 191  Q
    |||||| ||||||||| ||||||||||||||||| |||||||||    
T  37787950 atgtcacaagttgttttcataagctctctcaaacaatctcacaa 37787907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 137 - 175
Target Start/End: Complemental strand, 40499742 - 40499704
Alignment:
Q  137 agcttatagagatgtcataagttgtttccataagctctc 175  Q
    ||||||| || ||||||||||||||||||||||||||||    
T  40499742 agcttatggacatgtcataagttgtttccataagctctc 40499704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 63
Target Start/End: Complemental strand, 35095931 - 35095874
Alignment:
Q  7 gcttatcatataagttcttatatataat-tatttcaataacaaaagataaactaaagt 63  Q
    ||||||||||||||| ||||||| |||  |||||| ||||||||||||||| ||||||    
T  35095931 gcttatcatataagtgcttatatttaaactatttctataacaaaagataaaataaagt 35095874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 41; Significance: 0.00000000000008; HSPs: 20)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 133 - 181
Target Start/End: Complemental strand, 30988011 - 30987963
Alignment:
Q  133 aaatagcttatagagatgtcataagttgtttccataagctctctcaaac 181  Q
    ||||||||||| || ||||||||||||||||||||||||||||||||||    
T  30988011 aaatagcttatggacatgtcataagttgtttccataagctctctcaaac 30987963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 148 - 218
Target Start/End: Complemental strand, 30191146 - 30191076
Alignment:
Q  148 atgtcataagttgtttccataagctctctcaaaccatctcacaattgcttatttcgatagataaactcaaa 218  Q
    |||||||||||||||||||||||||||| |||||  ||| |||| |||||||  | |||||||||||||||    
T  30191146 atgtcataagttgtttccataagctctcccaaacagtctaacaagtgcttatgccaatagataaactcaaa 30191076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 133 - 181
Target Start/End: Original strand, 27645954 - 27646002
Alignment:
Q  133 aaatagcttatagagatgtcataagttgtttccataagctctctcaaac 181  Q
    |||||||||||||| |||||||||||||| | |||||||||||||||||    
T  27645954 aaatagcttatagatatgtcataagttgtatgcataagctctctcaaac 27646002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 133 - 181
Target Start/End: Complemental strand, 31875615 - 31875567
Alignment:
Q  133 aaatagcttatagagatgtcataagttgtttccataagctctctcaaac 181  Q
    |||| |||||| || ||||||||||||||||||||||||| ||||||||    
T  31875615 aaatggcttatggacatgtcataagttgtttccataagctttctcaaac 31875567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 133 - 173
Target Start/End: Original strand, 43709312 - 43709352
Alignment:
Q  133 aaatagcttatagagatgtcataagttgtttccataagctc 173  Q
    |||||||||||||| |||||||||||| |||||||||||||    
T  43709312 aaatagcttatagacatgtcataagttatttccataagctc 43709352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 139 - 218
Target Start/End: Original strand, 6950378 - 6950457
Alignment:
Q  139 cttatagagatgtcataagttgtttccataagctctctcaaaccatctcacaattgcttatttcgatagataaactcaaa 218  Q
    ||||| || |||||||| ||||||| ||||||||||| ||||| ||||||||| || ||||  |  ||||||||||||||    
T  6950378 cttatcgacatgtcataggttgtttacataagctctcccaaacaatctcacaaatgtttatgccagtagataaactcaaa 6950457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 148 - 191
Target Start/End: Complemental strand, 37740432 - 37740389
Alignment:
Q  148 atgtcataagttgtttccataagctctctcaaaccatctcacaa 191  Q
    |||||||||||||||||||||| ||||| | |||||||||||||    
T  37740432 atgtcataagttgtttccataaactctccctaaccatctcacaa 37740389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 133 - 199
Target Start/End: Complemental strand, 29169956 - 29169890
Alignment:
Q  133 aaatagcttatagagatgtcataagttgtttccataagctctctcaaaccatctcacaattgcttat 199  Q
    ||||||||||| || |||||||| | ||||| ||||||||||| ||||| || |||||| |||||||    
T  29169956 aaatagcttatggatatgtcatatgctgttttcataagctctcccaaacaatttcacaagtgcttat 29169890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 9 - 77
Target Start/End: Original strand, 34563174 - 34563244
Alignment:
Q  9 ttatcatataagttcttatatataa-ttatttcaataacaaaagataaactaaagt-taacaattttcata 77  Q
    ||||||||||||| ||||||||||| ||||||| || ||||| |||||| ||||||  |||||||||||||    
T  34563174 ttatcatataagtgcttatatataagttatttctatgacaaaggataaaataaagtcaaacaattttcata 34563244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 148 - 190
Target Start/End: Original strand, 40071814 - 40071856
Alignment:
Q  148 atgtcataagttgtttccataagctctctcaaaccatctcaca 190  Q
    |||||||||||||||||||||||||||| |||||  |||||||    
T  40071814 atgtcataagttgtttccataagctctcccaaacactctcaca 40071856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 137 - 175
Target Start/End: Original strand, 45071428 - 45071466
Alignment:
Q  137 agcttatagagatgtcataagttgtttccataagctctc 175  Q
    |||||||||| |||||||||||||||| |||||||||||    
T  45071428 agcttatagacatgtcataagttgttttcataagctctc 45071466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 134 - 191
Target Start/End: Original strand, 11415205 - 11415262
Alignment:
Q  134 aatagcttatagagatgtcataagttgtttccataagctctctcaaaccatctcacaa 191  Q
    |||||||||| || |||| ||||| ||||||||||| |||||| |||| |||||||||    
T  11415205 aatagcttatggacatgttataagctgtttccataaactctctaaaacaatctcacaa 11415262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 63
Target Start/End: Original strand, 14482124 - 14482181
Alignment:
Q  7 gcttatcatataagttcttatatataat-tatttcaataacaaaagataaactaaagt 63  Q
    ||||||||||||||| ||||| |||||  |||||| ||||||||||||||| ||||||    
T  14482124 gcttatcatataagtgcttatgtataaactatttctataacaaaagataaaataaagt 14482181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 149 - 218
Target Start/End: Complemental strand, 25881419 - 25881350
Alignment:
Q  149 tgtcataagttgtttccataagctctctcaaaccatctcacaattgcttatttcgatagataaactcaaa 218  Q
    ||||||||||||||||  |||||||| ||||||  |||||||| | ||||| ||  ||||||||||||||    
T  25881419 tgtcataagttgtttctctaagctctttcaaacagtctcacaagtacttatgtcagtagataaactcaaa 25881350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 139 - 180
Target Start/End: Original strand, 26479841 - 26479882
Alignment:
Q  139 cttatagagatgtcataagttgtttccataagctctctcaaa 180  Q
    |||||||| ||| |||||||||||||||||||||||| ||||    
T  26479841 cttatagacatgacataagttgtttccataagctctcgcaaa 26479882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 139 - 180
Target Start/End: Original strand, 30259170 - 30259211
Alignment:
Q  139 cttatagagatgtcataagttgtttccataagctctctcaaa 180  Q
    |||||||| || ||||||| ||||||||||||||||||||||    
T  30259170 cttatagacatatcataagctgtttccataagctctctcaaa 30259211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 148 - 181
Target Start/End: Complemental strand, 30600354 - 30600321
Alignment:
Q  148 atgtcataagttgtttccataagctctctcaaac 181  Q
    ||||||| ||||||||||||||||||||||||||    
T  30600354 atgtcatgagttgtttccataagctctctcaaac 30600321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 86
Target Start/End: Complemental strand, 35453771 - 35453690
Alignment:
Q  7 gcttatcatataagttcttatatataat-tatttcaataacaaaagataaactaaagtt-aacaattttcatagaagttata 86  Q
    |||| |||||||||| |||||||||||| | |||| | ||||||||||||| ||||||| ||| | ||||||| ||||||||    
T  35453771 gcttgtcatataagtacttatatataatctgtttctacaacaaaagataaaataaagttaaactagtttcatataagttata 35453690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 151 - 188
Target Start/End: Complemental strand, 40280228 - 40280191
Alignment:
Q  151 tcataagttgtttccataagctctctcaaaccatctca 188  Q
    ||||||||||||||||||| ||||||||||| ||||||    
T  40280228 tcataagttgtttccataaactctctcaaacaatctca 40280191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 63
Target Start/End: Complemental strand, 40280353 - 40280296
Alignment:
Q  7 gcttatcatataagttcttatatataa-ttatttcaataacaaaagataaactaaagt 63  Q
    ||||||||||||||| | ||||||||| ||||||| | ||||||||||||| ||||||    
T  40280353 gcttatcatataagtgcctatatataagttatttctacaacaaaagataaaataaagt 40280296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 39; Significance: 0.000000000001; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 133 - 191
Target Start/End: Complemental strand, 25183007 - 25182949
Alignment:
Q  133 aaatagcttatagagatgtcataagttgtttccataagctctctcaaaccatctcacaa 191  Q
    ||||||||||| || |||||||||||||||| |||||||||||||||||  ||||||||    
T  25183007 aaatagcttatggatatgtcataagttgttttcataagctctctcaaacagtctcacaa 25182949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 128 - 181
Target Start/End: Original strand, 31403063 - 31403116
Alignment:
Q  128 gcttgaaatagcttatagagatgtcataagttgtttccataagctctctcaaac 181  Q
    |||| ||||| |||||||| |||| |||||||||||||||||||||||||||||    
T  31403063 gcttaaaataccttatagacatgtaataagttgtttccataagctctctcaaac 31403116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 139 - 199
Target Start/End: Original strand, 24281103 - 24281163
Alignment:
Q  139 cttatagagatgtcataagttgtttccataagctctctcaaaccatctcacaattgcttat 199  Q
    ||||| ||||| ||||||||||||| ||||||||||||||||| ||| ||||| |||||||    
T  24281103 cttatggagatatcataagttgttttcataagctctctcaaacaatcacacaagtgcttat 24281163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 9 - 61
Target Start/End: Complemental strand, 16790234 - 16790181
Alignment:
Q  9 ttatcatataagttcttatatataa-ttatttcaataacaaaagataaactaaa 61  Q
    ||||||||||||| ||||||||||| ||||||| ||||||||||||||| ||||    
T  16790234 ttatcatataagtgcttatatataagttatttctataacaaaagataaaataaa 16790181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 139 - 199
Target Start/End: Original strand, 37273190 - 37273250
Alignment:
Q  139 cttatagagatgtcataagttgtttccataagctctctcaaaccatctcacaattgcttat 199  Q
    ||||| || |||||||||||||||||||||||||||| |||||  |||||| | |||||||    
T  37273190 cttatggacatgtcataagttgtttccataagctctcccaaacagtctcaccagtgcttat 37273250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 148 - 191
Target Start/End: Original strand, 2321243 - 2321286
Alignment:
Q  148 atgtcataagttgtttccataagctctctcaaaccatctcacaa 191  Q
    |||| ||||||||||||||||| ||||||||||| |||||||||    
T  2321243 atgtaataagttgtttccataaactctctcaaacaatctcacaa 2321286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 148 - 211
Target Start/End: Original strand, 43115121 - 43115184
Alignment:
Q  148 atgtcataagttgtttccataagctctctcaaaccatctcacaattgcttatttcgatagataa 211  Q
    |||||||||||||||||||||| ||||  ||||| ||||||||| || |||| || ||||||||    
T  43115121 atgtcataagttgtttccataaactcttccaaacaatctcacaagtgattatgtcaatagataa 43115184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 151 - 217
Target Start/End: Original strand, 27294414 - 27294480
Alignment:
Q  151 tcataagttgtttccataagctctctcaaaccatctcacaattgcttatttcgatagataaactcaa 217  Q
    |||| ||||||||| || |||||||||||||  |||||||| |||||||  | ||||||||||||||    
T  27294414 tcatgagttgtttctatgagctctctcaaacagtctcacaagtgcttatgacaatagataaactcaa 27294480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 148 - 217
Target Start/End: Original strand, 50004717 - 50004787
Alignment:
Q  148 atgtcataagttgtttccataa-gctctctcaaaccatctcacaattgcttatttcgatagataaactcaa 217  Q
    |||||||||||||||||||||| || |||||||||  ||| |||||||||||| ||  || ||||||||||    
T  50004717 atgtcataagttgtttccataaggccctctcaaacagtcttacaattgcttatgtcagtaaataaactcaa 50004787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 148 - 181
Target Start/End: Complemental strand, 2606315 - 2606282
Alignment:
Q  148 atgtcataagttgtttccataagctctctcaaac 181  Q
    ||||||||||||||||||||||| ||||||||||    
T  2606315 atgtcataagttgtttccataagatctctcaaac 2606282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 139 - 196
Target Start/End: Complemental strand, 11039353 - 11039296
Alignment:
Q  139 cttatagagatgtcataagttgtttccataagctctctcaaaccatctcacaattgct 196  Q
    ||||| || |||||||||  |||||||||||||||| ||||||  |||||||||||||    
T  11039353 cttatggacatgtcataatatgtttccataagctctttcaaacagtctcacaattgct 11039296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 42 - 106
Target Start/End: Complemental strand, 37689496 - 37689431
Alignment:
Q  42 ataacaaaagataaactaaagttaaca-attttcatagaagttataagctattttcataaactatt 106  Q
    ||||||||||||||| |||||||||   ||||||||| ||| ||||| |||||||||||| |||||    
T  37689496 ataacaaaagataaagtaaagttaaattattttcatataagctataaactattttcataagctatt 37689431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 148 - 181
Target Start/End: Complemental strand, 40880953 - 40880920
Alignment:
Q  148 atgtcataagttgtttccataagctctctcaaac 181  Q
    |||||||||||||||| |||||||||||||||||    
T  40880953 atgtcataagttgttttcataagctctctcaaac 40880920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 139 - 180
Target Start/End: Complemental strand, 49845554 - 49845513
Alignment:
Q  139 cttatagagatgtcataagttgtttccataagctctctcaaa 180  Q
    |||||||| | |||||||||||||||||||||||||| ||||    
T  49845554 cttatagaaacgtcataagttgtttccataagctctcccaaa 49845513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 39; Significance: 0.000000000001; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 137 - 199
Target Start/End: Original strand, 15581308 - 15581370
Alignment:
Q  137 agcttatagagatgtcataagttgtttccataagctctctcaaaccatctcacaattgcttat 199  Q
    |||||||||| |||||||||||||||||||| ||||||  ||||| ||||||||| |||||||    
T  15581308 agcttatagacatgtcataagttgtttccattagctcttccaaacaatctcacaagtgcttat 15581370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 148 - 199
Target Start/End: Complemental strand, 23373318 - 23373267
Alignment:
Q  148 atgtcataagttgtttccataagctctctcaaaccatctcacaattgcttat 199  Q
    ||||||||||||||||| |||||||||| ||||| ||||||||| |||||||    
T  23373318 atgtcataagttgtttctataagctctcccaaacaatctcacaagtgcttat 23373267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 7 - 100
Target Start/End: Original strand, 52286600 - 52286695
Alignment:
Q  7 gcttatcatataagttcttatatataat-tatttcaataacaaaagataaactaaagttaa-caattttcatagaagttataagctattttcataa 100  Q
    ||||||||||||||  |||||  ||||  |||||| | ||||||||||||| ||||||||| ||||||||||| ||| ||||| ||||||||||||    
T  52286600 gcttatcatataagcgcttatgaataagatatttctacaacaaaagataaaataaagttaaacaattttcatataagctataaactattttcataa 52286695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 135 - 176
Target Start/End: Complemental strand, 17631120 - 17631079
Alignment:
Q  135 atagcttatagagatgtcataagttgtttccataagctctct 176  Q
    ||||||||| || |||||||||||||||||||||||||||||    
T  17631120 atagcttatggacatgtcataagttgtttccataagctctct 17631079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 148 - 188
Target Start/End: Complemental strand, 49521810 - 49521770
Alignment:
Q  148 atgtcataagttgtttccataagctctctcaaaccatctca 188  Q
    ||||||||||||||||||| |||||||||||||| ||||||    
T  49521810 atgtcataagttgtttccacaagctctctcaaacaatctca 49521770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 148 - 191
Target Start/End: Complemental strand, 4363639 - 4363596
Alignment:
Q  148 atgtcataagttgtttccataagctctctcaaaccatctcacaa 191  Q
    ||||||||||||||||| |||||| ||||||||| |||||||||    
T  4363639 atgtcataagttgtttcgataagcgctctcaaacaatctcacaa 4363596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 140 - 199
Target Start/End: Complemental strand, 4549554 - 4549495
Alignment:
Q  140 ttatagagatgtcataagttgtttccataagctctctcaaaccatctcacaattgcttat 199  Q
    ||||||| ||||||||||||||||| |||||||||| |||||  ||||| || |||||||    
T  4549554 ttatagacatgtcataagttgtttctataagctctcccaaacagtctcagaaatgcttat 4549495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 139 - 218
Target Start/End: Original strand, 4868456 - 4868534
Alignment:
Q  139 cttatagagatgtcataagttgtttccataagctctctcaaaccatctcacaattgcttatttcgatagataaactcaaa 218  Q
    ||||| || ||||||||||||||||| |||| |||||||||||  |||||||| ||| ||| || ||||||||| |||||    
T  4868456 cttattgacatgtcataagttgtttc-ataaactctctcaaacagtctcacaagtgcctatgtcaatagataaattcaaa 4868534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 133 - 180
Target Start/End: Complemental strand, 11560582 - 11560535
Alignment:
Q  133 aaatagcttatagagatgtcataagttgtttccataagctctctcaaa 180  Q
    |||||| |||| || ||||||||||||||||||||||||||| |||||    
T  11560582 aaatagtttatggatatgtcataagttgtttccataagctctatcaaa 11560535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 63
Target Start/End: Complemental strand, 16982086 - 16982027
Alignment:
Q  5 gagcttatcatataagttcttatatataa-ttatttcaataacaaaagataaactaaagt 63  Q
    |||||||||||||||||  |||| ||||| ||||||| ||||||||||||||| ||||||    
T  16982086 gagcttatcatataagtgtttatgtataacttatttcgataacaaaagataaaataaagt 16982027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 139 - 218
Target Start/End: Complemental strand, 32515455 - 32515376
Alignment:
Q  139 cttatagagatgtcataagttgtttccataagctctctcaaaccatctcacaattgcttatttcgatagataaactcaaa 218  Q
    ||||| || |||||||| | ||||||||||||||||| |||||  |||||||| ||||||| |   ||||||||||||||    
T  32515455 cttattgacatgtcatacgctgtttccataagctctcccaaacagtctcacaagtgcttatgttagtagataaactcaaa 32515376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 135 - 174
Target Start/End: Complemental strand, 37175942 - 37175903
Alignment:
Q  135 atagcttatagagatgtcataagttgtttccataagctct 174  Q
    |||||||||| | |||||||||||||||||||||||||||    
T  37175942 atagcttataaatatgtcataagttgtttccataagctct 37175903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 151 - 198
Target Start/End: Complemental strand, 37272596 - 37272549
Alignment:
Q  151 tcataagttgtttccataagctctctcaaaccatctcacaattgctta 198  Q
    ||||||| ||| ||||||||||||||||||| ||||||||| ||||||    
T  37272596 tcataagctgtctccataagctctctcaaacaatctcacaagtgctta 37272549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 10 - 63
Target Start/End: Original strand, 36641800 - 36641854
Alignment:
Q  10 tatcatataagttcttatatataa-ttatttcaataacaaaagataaactaaagt 63  Q
    |||||||||| | ||||||||||| ||||||| ||||||||||||||| ||||||    
T  36641800 tatcatataattacttatatataagttatttctataacaaaagataaaataaagt 36641854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 150 - 191
Target Start/End: Complemental strand, 4034020 - 4033979
Alignment:
Q  150 gtcataagttgtttccataagctctctcaaaccatctcacaa 191  Q
    |||||||||| ||| ||||||||||||||||| |||||||||    
T  4034020 gtcataagttattttcataagctctctcaaacaatctcacaa 4033979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 38; Significance: 0.000000000005; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 7 - 63
Target Start/End: Complemental strand, 28803654 - 28803597
Alignment:
Q  7 gcttatcatataagttcttatatataa-ttatttcaataacaaaagataaactaaagt 63  Q
    ||||||||||||||| ||||||||||| ||||||| ||||||||||||||| ||||||    
T  28803654 gcttatcatataagtgcttatatataagttatttcgataacaaaagataaaataaagt 28803597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 137 - 174
Target Start/End: Original strand, 6561391 - 6561428
Alignment:
Q  137 agcttatagagatgtcataagttgtttccataagctct 174  Q
    |||||||||| |||||||||||||||||||||||||||    
T  6561391 agcttatagatatgtcataagttgtttccataagctct 6561428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 137 - 218
Target Start/End: Complemental strand, 28803546 - 28803465
Alignment:
Q  137 agcttatagagatgtcataagttgtttccataagctctctcaaaccatctcacaattgcttatttcgatagataaactcaaa 218  Q
    ||||||| || ||||||||||||||||||||| | ||||||||||  |||||||  |||||||  || ||||||| ||||||    
T  28803546 agcttatggacatgtcataagttgtttccatatgttctctcaaacagtctcacatgtgcttatgccggtagataagctcaaa 28803465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 133 - 181
Target Start/End: Original strand, 4550797 - 4550845
Alignment:
Q  133 aaatagcttatagagatgtcataagttgtttccataagctctctcaaac 181  Q
    |||||||||||  | |||||||||||||||||||||||||||| |||||    
T  4550797 aaatagcttatgaacatgtcataagttgtttccataagctctcccaaac 4550845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 105
Target Start/End: Complemental strand, 17952848 - 17952749
Alignment:
Q  8 cttatcatataagttcttatatataat-tatttcaataacaaaagataaactaaagt-taacaattttcatagaagttataagctattttcataaactat 105  Q
    |||||||||||||  |||||||||||  |||||| ||||||||||||||| ||||||  ||| ||||||||| ||| || ||| | ||||||||| ||||    
T  17952848 cttatcatataagagcttatatataagctatttctataacaaaagataaaataaagtcaaactattttcatataagctacaagatgttttcataagctat 17952749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 137 - 175
Target Start/End: Complemental strand, 14316161 - 14316123
Alignment:
Q  137 agcttatagagatgtcataagttgtttccataagctctc 175  Q
    |||||||| | ||||||||||||||||||||||||||||    
T  14316161 agcttatacatatgtcataagttgtttccataagctctc 14316123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 137 - 191
Target Start/End: Complemental strand, 34652052 - 34651998
Alignment:
Q  137 agcttatagagatgtcataagttgtttccataagctctctcaaaccatctcacaa 191  Q
    ||||||| || ||||||||||||||||| ||||||| |||| |||| ||||||||    
T  34652052 agcttatggacatgtcataagttgtttctataagctttctccaaccgtctcacaa 34651998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 135 - 180
Target Start/End: Complemental strand, 1742050 - 1742005
Alignment:
Q  135 atagcttatagagatgtcataagttgtttccataagctctctcaaa 180  Q
    |||||||||  | |||||||||||||||||||||||||||| ||||    
T  1742050 atagcttatgcacatgtcataagttgtttccataagctctcccaaa 1742005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 149 - 218
Target Start/End: Complemental strand, 14277897 - 14277828
Alignment:
Q  149 tgtcataagttgtttccataagctctctcaaaccatctcacaattgcttatttcgatagataaactcaaa 218  Q
    ||||||||||||||||||| ||||||  |||||  |||||||| | ||||| ||  ||||||||||||||    
T  14277897 tgtcataagttgtttccatgagctcttccaaacactctcacaagtacttatgtccgtagataaactcaaa 14277828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 148 - 181
Target Start/End: Original strand, 15120248 - 15120281
Alignment:
Q  148 atgtcataagttgtttccataagctctctcaaac 181  Q
    |||||||||||||||||||||||||||| |||||    
T  15120248 atgtcataagttgtttccataagctctcccaaac 15120281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 153 - 214
Target Start/End: Original strand, 19978017 - 19978078
Alignment:
Q  153 ataagttgtttccataagctctctcaaaccatctcacaattgcttatttcgatagataaact 214  Q
    |||||||||||| ||||| ||||||||||  |||| ||| |||||||||  |||||||||||    
T  19978017 ataagttgtttctataagttctctcaaacagtctcgcaagtgcttattttaatagataaact 19978078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 63
Target Start/End: Complemental strand, 43431592 - 43431535
Alignment:
Q  7 gcttatcatataagttcttatatataa-ttatttcaataacaaaagataaactaaagt 63  Q
    |||||||||||||||  | || ||||| ||||||||||||||||||||||| ||||||    
T  43431592 gcttatcatataagtgttaatgtataagttatttcaataacaaaagataaagtaaagt 43431535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 37; Significance: 0.00000000002; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 139 - 191
Target Start/End: Complemental strand, 2460165 - 2460113
Alignment:
Q  139 cttatagagatgtcataagttgtttccataagctctctcaaaccatctcacaa 191  Q
    |||| ||| ||||||||||||||||||||||||||||||||||  ||||||||    
T  2460165 cttaaagacatgtcataagttgtttccataagctctctcaaacagtctcacaa 2460113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 137 - 200
Target Start/End: Original strand, 32917251 - 32917314
Alignment:
Q  137 agcttatagagatgtcataagttgtttccataagctctctcaaaccatctcacaattgcttatt 200  Q
    ||||||| || |||||||||||||||||||||||||||| |||||  |||||||| || |||||    
T  32917251 agcttatggacatgtcataagttgtttccataagctctcccaaacagtctcacaagtgtttatt 32917314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 7 - 63
Target Start/End: Original strand, 4248880 - 4248937
Alignment:
Q  7 gcttatcatataagttcttatatataat-tatttcaataacaaaagataaactaaagt 63  Q
    |||| |||||||||| |||||||||||  |||||||||||||||||||||| ||||||    
T  4248880 gcttgtcatataagtgcttatatataagctatttcaataacaaaagataaaataaagt 4248937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 137 - 218
Target Start/End: Original strand, 27857412 - 27857493
Alignment:
Q  137 agcttatagagatgtcataagttgtttccataagctctctcaaaccatctcacaattgcttatttcgatagataaactcaaa 218  Q
    ||||||| ||||||||||||||||||| ||||||||||| |||||  | |||||| ||  ||| ||  ||||||||||||||    
T  27857412 agcttatggagatgtcataagttgttttcataagctctcccaaacagtttcacaagtgtctatgtcagtagataaactcaaa 27857493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 149 - 181
Target Start/End: Original strand, 34939579 - 34939611
Alignment:
Q  149 tgtcataagttgtttccataagctctctcaaac 181  Q
    |||||||||||||||||||||||||||||||||    
T  34939579 tgtcataagttgtttccataagctctctcaaac 34939611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 137 - 175
Target Start/End: Complemental strand, 1669814 - 1669776
Alignment:
Q  137 agcttatagagatgtcataagttgtttccataagctctc 175  Q
    |||||||||| |||||||||||||||| |||||||||||    
T  1669814 agcttatagacatgtcataagttgttttcataagctctc 1669776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 153 - 199
Target Start/End: Original strand, 2455683 - 2455729
Alignment:
Q  153 ataagttgtttccataagctctctcaaaccatctcacaattgcttat 199  Q
    |||||||||||||||||||||| ||||||  |||||||| |||||||    
T  2455683 ataagttgtttccataagctctttcaaacagtctcacaaatgcttat 2455729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 148 - 218
Target Start/End: Original strand, 2455875 - 2455945
Alignment:
Q  148 atgtcataagttgtttccataagctctctcaaaccatctcacaattgcttatttcgatagataaactcaaa 218  Q
    |||||||||||||||||||||||||||   |||| ||||| ||| |||||||  || ||||||| ||||||    
T  2455875 atgtcataagttgtttccataagctcttctaaacaatctcgcaagtgcttatgccggtagataagctcaaa 2455945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 137 - 175
Target Start/End: Complemental strand, 6310266 - 6310228
Alignment:
Q  137 agcttatagagatgtcataagttgtttccataagctctc 175  Q
    |||||||||| |||||||||||||||| |||||||||||    
T  6310266 agcttatagacatgtcataagttgttttcataagctctc 6310228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 149 - 191
Target Start/End: Original strand, 24782257 - 24782299
Alignment:
Q  149 tgtcataagttgtttccataagctctctcaaaccatctcacaa 191  Q
    |||||||||||||||| |||||||||||||||| || ||||||    
T  24782257 tgtcataagttgtttctataagctctctcaaacaatttcacaa 24782299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 135 - 200
Target Start/End: Original strand, 1403048 - 1403113
Alignment:
Q  135 atagcttatagagatgtcataagttgtttccataagctctctcaaaccatctcacaattgcttatt 200  Q
    |||| ||||||| ||||||||||||||||| |||| ||||| || ||  |||||||| ||||||||    
T  1403048 atagtttatagatatgtcataagttgtttcgataaactctcccacacagtctcacaagtgcttatt 1403113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 66
Target Start/End: Complemental strand, 10749373 - 10749316
Alignment:
Q  9 ttatcatataagttcttatatataattatttcaataacaaaagataaactaaagttaa 66  Q
    |||||||||||| | |||| ||||| |||||| |||| |||||||||| |||||||||    
T  10749373 ttatcatataagatgttatgtataagtatttctataataaaagataaaataaagttaa 10749316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 148 - 181
Target Start/End: Complemental strand, 31594389 - 31594356
Alignment:
Q  148 atgtcataagttgtttccataagctctctcaaac 181  Q
    |||||||||||||||||||||| |||||||||||    
T  31594389 atgtcataagttgtttccataacctctctcaaac 31594356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 148 - 181
Target Start/End: Complemental strand, 32577991 - 32577958
Alignment:
Q  148 atgtcataagttgtttccataagctctctcaaac 181  Q
    |||||||||||||||| |||||||||||||||||    
T  32577991 atgtcataagttgttttcataagctctctcaaac 32577958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 37; Significance: 0.00000000002; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 139 - 191
Target Start/End: Complemental strand, 27123366 - 27123314
Alignment:
Q  139 cttatagagatgtcataagttgtttccataagctctctcaaaccatctcacaa 191  Q
    |||| ||| ||||||||||||||||||||||||||||||||||  ||||||||    
T  27123366 cttaaagacatgtcataagttgtttccataagctctctcaaacagtctcacaa 27123314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 133 - 181
Target Start/End: Original strand, 49893366 - 49893414
Alignment:
Q  133 aaatagcttatagagatgtcataagttgtttccataagctctctcaaac 181  Q
    |||||||||| |||||||||||||| ||||||||||||||| |||||||    
T  49893366 aaatagcttacagagatgtcataagctgtttccataagctccctcaaac 49893414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 137 - 199
Target Start/End: Original strand, 2996627 - 2996689
Alignment:
Q  137 agcttatagagatgtcataagttgtttccataagctctctcaaaccatctcacaattgcttat 199  Q
    ||||||| || |||||||||||||||| |||||||||||||||||  ||||| || |||||||    
T  2996627 agcttatggacatgtcataagttgttttcataagctctctcaaacagtctcaaaagtgcttat 2996689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 139 - 199
Target Start/End: Original strand, 6428074 - 6428134
Alignment:
Q  139 cttatagagatgtcataagttgtttccataagctctctcaaaccatctcacaattgcttat 199  Q
    ||||| || |||||||||||||||| ||||| |||||||||||  |||||||| |||||||    
T  6428074 cttatggacatgtcataagttgttttcataatctctctcaaactgtctcacaagtgcttat 6428134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 150 - 218
Target Start/End: Original strand, 25717660 - 25717728
Alignment:
Q  150 gtcataagttgtttccataagctctctcaaaccatctcacaattgcttatttcgatagataaactcaaa 218  Q
    |||||||||||||||||||||||||  ||||| || |||||| ||||||| ||| || |||| ||||||    
T  25717660 gtcataagttgtttccataagctcttccaaacaatttcacaagtgcttatgtcggtacataagctcaaa 25717728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 133 - 181
Target Start/End: Original strand, 27725264 - 27725312
Alignment:
Q  133 aaatagcttatagagatgtcataagttgtttccataagctctctcaaac 181  Q
    |||||| |||| || |||||||||||| |||||||||||||||||||||    
T  27725264 aaatagtttatggacatgtcataagttatttccataagctctctcaaac 27725312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 13 - 63
Target Start/End: Original strand, 4071811 - 4071861
Alignment:
Q  13 catataagttcttatatataattatttcaataacaaaagataaactaaagt 63  Q
    |||||||||  |||||||||| |||||| ||||||||||||||| ||||||    
T  4071811 catataagtgtttatatataactatttctataacaaaagataaaataaagt 4071861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 133 - 191
Target Start/End: Complemental strand, 6987761 - 6987703
Alignment:
Q  133 aaatagcttatagagatgtcataagttgtttccataagctctctcaaaccatctcacaa 191  Q
    |||||| |||| || |||||||||||||| ||||||||||||| |||||  ||||||||    
T  6987761 aaatagtttatggacatgtcataagttgtatccataagctctcccaaacagtctcacaa 6987703  T

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Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 128 - 218
Target Start/End: Original strand, 32071913 - 32071998
Alignment:
Q  128 gcttgaaatagcttatagagatgtcataagttgtttccataagctctctcaaaccatctcacaattgcttatttcgatagataaactcaaa 218  Q
    |||| ||| ||||||| ||  |||||||||||||||||||||     |||||||  |||||||| ||||||| || |||||||||||||||    
T  32071913 gcttaaaacagcttatggacgtgtcataagttgtttccataa-----ctcaaactgtctcacaagtgcttatgtcaatagataaactcaaa 32071998  T

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Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 43 - 100
Target Start/End: Complemental strand, 35900363 - 35900305
Alignment:
Q  43 taacaaaagataaactaaagttaa-caattttcatagaagttataagctattttcataa 100  Q
    |||||||||||||| ||||||||| | |||||||||| || |||||| |||||||||||    
T  35900363 taacaaaagataaattaaagttaatccattttcataggagctataagttattttcataa 35900305  T

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Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 138 - 172
Target Start/End: Complemental strand, 46175692 - 46175658
Alignment:
Q  138 gcttatagagatgtcataagttgtttccataagct 172  Q
    |||||| ||||||||||||||||||||||||||||    
T  46175692 gcttatggagatgtcataagttgtttccataagct 46175658  T

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Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 28 - 66
Target Start/End: Original strand, 47800574 - 47800612
Alignment:
Q  28 atataattatttcaataacaaaagataaactaaagttaa 66  Q
    ||||||||||||| ||||||||||||||| |||||||||    
T  47800574 atataattatttctataacaaaagataaaataaagttaa 47800612  T

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Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 137 - 191
Target Start/End: Complemental strand, 50800046 - 50799992
Alignment:
Q  137 agcttatagagatgtcataagttgtttccataagctctctcaaaccatctcacaa 191  Q
    |||||||||| |||||||||||||||| ||| || |||| ||||| |||||||||    
T  50800046 agcttatagacatgtcataagttgtttacattagttctcccaaacaatctcacaa 50799992  T

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Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 140 - 181
Target Start/End: Original strand, 23676753 - 23676794
Alignment:
Q  140 ttatagagatgtcataagttgtttccataagctctctcaaac 181  Q
    ||||||| ||| ||||||||||||||||||||| ||||||||    
T  23676753 ttatagatatgccataagttgtttccataagctatctcaaac 23676794  T

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Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 35 - 103
Target Start/End: Original strand, 24929444 - 24929513
Alignment:
Q  35 tatttcaataacaaaagataaactaaagt-taacaattttcatagaagttataagctattttcataaact 103  Q
    |||||| ||||||||||||||| |||||| ||||  |||||||| ||| |||||| | ||||||||||||    
T  24929444 tatttctataacaaaagataaaataaagtctaactgttttcataaaagctataagttgttttcataaact 24929513  T

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Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 140 - 181
Target Start/End: Original strand, 53155317 - 53155358
Alignment:
Q  140 ttatagagatgtcataagttgtttccataagctctctcaaac 181  Q
    ||||||| |||||||||||||||| ||||||||||| |||||    
T  53155317 ttatagacatgtcataagttgtttgcataagctctcacaaac 53155358  T

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