View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3587_low_12 (Length: 243)
Name: NF3587_low_12
Description: NF3587
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3587_low_12 |
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| [»] chr7 (1 HSPs) |
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| [»] chr8 (1 HSPs) |
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| [»] chr2 (1 HSPs) |
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| [»] chr4 (1 HSPs) |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 231; Significance: 1e-128; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 231; E-Value: 1e-128
Query Start/End: Original strand, 1 - 243
Target Start/End: Complemental strand, 45432532 - 45432290
Alignment:
| Q |
1 |
ttttgcaaagacttatcttcaacaaatttagtagtaacaagaaaaactgcattcatgaaataaatcaaaaaatctgactgtgtttttcctcttcatcacc |
100 |
Q |
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| T |
45432532 |
ttttgcaaagacttatcttcaacaaatttagtagtaacaagaaaaactgcattcatgaaataaataaaaaaatctgactgtgtttttcctcttcatcacc |
45432433 |
T |
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| Q |
101 |
aatgttgggttttgctggaagaagaagcgttggacttgaaacaacttgaaaaagcctcgaaacaaacatctatgagatacatgtgttgttttagtgacca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45432432 |
aatgttgggttttgctggaagaagaagcgttggacttgaaacaacttgaaaaagcctcgaaacaaacatctatgagatacatgtgttgttttagtgacca |
45432333 |
T |
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| Q |
201 |
ttataatctcaaccgtttatctcaatctaatggttaataatta |
243 |
Q |
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| T |
45432332 |
atataatctcaaccgtttatcccaatctaatggttaataatta |
45432290 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 211; Significance: 1e-116; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 1 - 243
Target Start/End: Complemental strand, 42293844 - 42293602
Alignment:
| Q |
1 |
ttttgcaaagacttatcttcaacaaatttagtagtaacaagaaaaactgcattcatgaaataaatcaaaaaatctgactgtgtttttcctcttcatcacc |
100 |
Q |
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| T |
42293844 |
ttttgcaaagacttatcttcaacaaatttaatagtaacaagaaaaattgcattcatgaaataaataaaaaaatctgactgtgtttttcctcttcatcacc |
42293745 |
T |
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| Q |
101 |
aatgttgggttttgctggaagaagaagcgttggacttgaaacaacttgaaaaagcctcgaaacaaacatctatgagatacatgtgttgttttagtgacca |
200 |
Q |
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||||||||||||||||||||||||||||| ||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42293744 |
aatgttgggttttgctggaagaagaagcgctggacctgaaacaacttgaaaaaacctcgaaacaaacatctatgagatacatgtgttgttttagtgacca |
42293645 |
T |
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| Q |
201 |
ttataatctcaaccgtttatctcaatctaatggttaataatta |
243 |
Q |
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| T |
42293644 |
atataatctcaaccatttatctcaatctaatggttaataatta |
42293602 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 186; Significance: 1e-101; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 1 - 243
Target Start/End: Complemental strand, 34238275 - 34238025
Alignment:
| Q |
1 |
ttttgcaaagacttatcttcaacaaatttagtagtaacaagaaaaactgcattcatgaaataaatcaaaaaatctgactgtgtttttcctcttcatcacc |
100 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||| || |||| |||||||||||||||||||||||||| |
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| T |
34238275 |
ttttgcaaagacttatcttcaacaaatttagtagcaacaagaaaaacggcattcatgaaataaataaataaatatgactgtgtttttcctcttcatcacc |
34238176 |
T |
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| Q |
101 |
aatgttgggttttgctggaagaagaagcgttggacttgaaaca--------acttgaaaaagcctcgaaacaaacatctatgagatacatgtgttgtttt |
192 |
Q |
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| T |
34238175 |
gatgttgggttttgctggaagaagaagagttggacttgaaacaatcgttggacttgaaaaagccccgaaacaaacatctatgagatacatgtgttgtttt |
34238076 |
T |
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| Q |
193 |
agtgaccattataatctcaaccgtttatctcaatctaatggttaataatta |
243 |
Q |
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| T |
34238075 |
agtgaccaatataatctcaaccgtttatctcaatctaatggttaataatta |
34238025 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 183; Significance: 4e-99; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 1 - 243
Target Start/End: Original strand, 20423456 - 20423704
Alignment:
| Q |
1 |
ttttgcaaagacttatcttcaacaaatttagtagtaacaagaaaaactgcattcatgaaataaatcaaaaaatctgactgtgtttttcctcttcatcacc |
100 |
Q |
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|
|||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||| |||||||||||| |||||||||||||||||||| |
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| T |
20423456 |
ttttgcaaagacttatcttcaacaaatttaatagtaacaaagaaaactgcattcatgaaataaataaaaaaatctgac--tgtttttcctcttcatcacc |
20423553 |
T |
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| Q |
101 |
aatgttgggttttgctggaagaagaagcgttggacttgaaaca--------acttgaaaaagcctcgaaacaaacatctatgagatacatgtgttgtttt |
192 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
20423554 |
gatgttgggttttgctggaagaagaagcgttggacttgaaacaatcgttggacttgaaaaaacctcgaaacaaacatctatgagatacatgtgttgtttt |
20423653 |
T |
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| Q |
193 |
agtgaccattataatctcaaccgtttatctcaatctaatggttaataatta |
243 |
Q |
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| T |
20423654 |
agtgaccaatataatctcaaccgtttatctcaatctaatggttaataatta |
20423704 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 180; Significance: 3e-97; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 1 - 243
Target Start/End: Original strand, 10470614 - 10470846
Alignment:
| Q |
1 |
ttttgcaaagacttatcttcaacaaatttagtagtaacaagaaaaactgcattcatgaaataaatcaaaaaatctgactgtgtttttcctcttcatcacc |
100 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
10470614 |
ttttgcaaagacttatcttcaacaaatttagtagtaacaagaaaaactgcattcatgaaataaataaaaaaatctgactgtgtttttcctcttcatcacc |
10470713 |
T |
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| Q |
101 |
aatgttgggttttgctggaagaagaagcgttggacttgaaacaacttgaaaaagcctcgaaacaaacatctatgagatacatgtgttgttttagtgacca |
200 |
Q |
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|||||| ||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||| |||| ||||||||||||||| |
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| T |
10470714 |
gatgttgagttttgctggaagaagaagtgttgg----------acttgaaaaagcctcgaaacaaacatctatgagatatatgtcttgttttagtgacca |
10470803 |
T |
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| Q |
201 |
ttataatctcaaccgtttatctcaatctaatggttaataatta |
243 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |
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| T |
10470804 |
atataatctcaaccgtttatctcaatctaatggttaataatta |
10470846 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 1 - 243
Target Start/End: Original strand, 43512068 - 43512320
Alignment:
| Q |
1 |
ttttgcaaag-acttatcttcaacaaatttagtagtaacaagaaaaactgcattcatgaaataaa-tcaaaaaatctgactgtgtttttcctcttcatca |
98 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||| |||| |
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| T |
43512068 |
ttttgcaaaggacttatcttcaacaaatttagtagtaacaagaaaaactgcattcatgaaataaaataaaaaaatctgactgtgtttttcctctttatca |
43512167 |
T |
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| Q |
99 |
ccaatgttgggttttgctggaagaagaagcgttggacttgaaaca--------acttgaaaaagcctcgaaacaaacatctatgagatacatgtgttgtt |
190 |
Q |
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|| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||| |||||||||||||| |
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| T |
43512168 |
ccgatgttgggttttgctggaagaagaagcgttggacttgaaacaatcgttggacttgaaaaagcctcgaaacaaacatctgtgacatacatgtgttgtt |
43512267 |
T |
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| Q |
191 |
ttagtgaccattataatctcaaccgtttatctcaatctaatggttaataatta |
243 |
Q |
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|||||||||| |||||||| |||||||||||||||||||||| |||||||||| |
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| T |
43512268 |
ttagtgaccaatataatctgaaccgtttatctcaatctaatgattaataatta |
43512320 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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