View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3587_low_15 (Length: 238)
Name: NF3587_low_15
Description: NF3587
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3587_low_15 |
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Alignment Details
Target: chr2 (Bit Score: 72; Significance: 7e-33; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 162 - 233
Target Start/End: Complemental strand, 6812143 - 6812072
Alignment:
| Q |
162 |
catatgaagaatatatgcctgcaaataactttaagtctttaaccaattctttagtcacacatttgtcctatg |
233 |
Q |
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| T |
6812143 |
catatgaagaatatatgcctgcaaataactttaagtctttaaccaattctttagtcacacatttgtcctatg |
6812072 |
T |
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Target: chr2; HSP #2
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 18 - 79
Target Start/End: Complemental strand, 6812927 - 6812866
Alignment:
| Q |
18 |
ctacacttgtaagtaacatcatttttataaaattttctttcttctcaaccaggttttgtttt |
79 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6812927 |
ctacacttgtaagtaacatcatttttataaaattttctttcttctcaaccaggttttgtttt |
6812866 |
T |
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