View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3587_low_19 (Length: 219)
Name: NF3587_low_19
Description: NF3587
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3587_low_19 |
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Alignment Details
Target: chr1 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 205
Target Start/End: Original strand, 46817142 - 46817346
Alignment:
| Q |
1 |
aggcatgttacaagcacgggggagagagatagccaaggttctattgattggaattttgaagggaacacttgcagttacaaggagacacaaacaattcatg |
100 |
Q |
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| T |
46817142 |
aggcatgttacaagcacgggggagagagatagccaaggttctattgattggaattttgaagggaacacttgcagttacaaggagacacaaacaattcatg |
46817241 |
T |
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| Q |
101 |
ccactacttgttagggacttaagagcaccacaacattcagtggttggtgaggtgccattagcactactacctgtaagaaaacccatacaaggtgtgaaga |
200 |
Q |
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| T |
46817242 |
ccactacttgttagggacttaagagcaccacaacattcagtggttggtgaggtgccattagcactactacctgtaagaaaacccatacaaggtgtgaaga |
46817341 |
T |
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| Q |
201 |
gagtg |
205 |
Q |
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||||| |
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| T |
46817342 |
gagtg |
46817346 |
T |
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Target: chr5 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 1142552 - 1142602
Alignment:
| Q |
1 |
aggcatgttacaagcacgggggagagagatagccaaggttctattgattgg |
51 |
Q |
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||||| |||||||||||| || ||||||||||| ||||||||||||||||| |
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| T |
1142552 |
aggcaagttacaagcacgaggaagagagatagctaaggttctattgattgg |
1142602 |
T |
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