View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3587_low_3 (Length: 749)
Name: NF3587_low_3
Description: NF3587
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3587_low_3 |
 | |
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Alignment Details
Target: chr7 (Bit Score: 599; Significance: 0; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 599; E-Value: 0
Query Start/End: Original strand, 1 - 736
Target Start/End: Original strand, 4921562 - 4922298
Alignment:
| Q |
1 |
cttaagaaagctaccaataactttgatgaaaatcgaaaaattggagaaatatgcggcaatatagtgtacaaaggttatgtcaaatataatggtgaaaatg |
100 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||| || || | ||||||||| |||||||| ||||||||||||||||||||||||| |
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|
| T |
4921562 |
cttaagaaagctaccaataactttgataaaaatcgaaaaattggacaagtaaactacaatatagtctacaaaggctatgtcaaatataatggtgaaaatg |
4921661 |
T |
|
| Q |
101 |
attatccaatagcattgttgcggataactaatacattcatgaaagaatcgttcaagaatgaaattgaacttcactgccagctttctcacccaaatttgat |
200 |
Q |
| |
|
||||||||||||||||||||||||||| |||||| |||||||||| |||||||||||||||||||||| ||||||||| ||| ||| ||||||||||| |
|
|
| T |
4921662 |
attatccaatagcattgttgcggataaaagatacatacatgaaagaaacgttcaagaatgaaattgaactccactgccagatttgtcatccaaatttgat |
4921761 |
T |
|
| Q |
201 |
atctttgataggattttgtgaccnnnnnnntgagaaaattctcgtgtataaaaaagatgaaatggtcaatggctctctccgtgatcacttatgttcaagg |
300 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
4921762 |
atctttgataggattttgtgaccaaaaaaatgagaaaattctcgtgtataaaaaagatgaaatggtcaatggctctctccgtgatcacttatgttcaagg |
4921861 |
T |
|
| Q |
301 |
gacacggtttcactctcttggnnnnnnn-ggcttgaaatatgcattggagctgcaaaaggactacactaccttcacactggagcaaagcgcccgattttc |
399 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
4921862 |
gacacggtttcactctcttggaaaaaaaaggcttgaaatatgcattggagctgcaaaaggactgcactaccttcacactggagcaaagcgcccgattttc |
4921961 |
T |
|
| Q |
400 |
caccgtgacgtaaagccttgcagcattcttttggataacaatatggcaccaaaactctcgcaatttggattatccttacaagggaagctttcaaaatcgg |
499 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
4921962 |
caccgtgacgtaaagccttacagcattcttttggataacaatatggcaccaaaactctcgcaatttggattatccttacaagggaagctttcaaaatcgg |
4922061 |
T |
|
| Q |
500 |
agtcaaaaccaattgaagtcaacacgatttgtggtaaagtgttaaattttattaaactatttttatggtgcattcttatttatccatcaacaataggaag |
599 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
4922062 |
agtcaaaaccaattgaagtcaacgcgatttgtggtaaagtgttaaattttattaaactatttttatggtgcattcttatttatccatcaataataggaag |
4922161 |
T |
|
| Q |
600 |
gcaaataaattatttttattaatgtcaattttgatgggtaacctctacacaccttaccttttgtcgatgagtattttctagggatcgcctaaaatgtcca |
699 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
4922162 |
gcaaataaattatttttattaatgtcaattttgatgggtaacctctacacaccttaccttttgtcgatgagtattttctagggatcgcctaaaatgtcca |
4922261 |
T |
|
| Q |
700 |
attctcgattcccttgcctctctttatgttcttcttg |
736 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4922262 |
attctcgattcccttgcctctctttatgttcttcttg |
4922298 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 277; E-Value: 1e-154
Query Start/End: Original strand, 1 - 519
Target Start/End: Original strand, 4927804 - 4928322
Alignment:
| Q |
1 |
cttaagaaagctaccaataactttgatgaaaatcgaaaaattggagaaatatgcggcaatatagtgtacaaaggttatgtcaaatataatggtgaaaatg |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| || || ||| ||||||| |||||||| ||||||||||||||||||||||||| |
|
|
| T |
4927804 |
cttaagaaagctaccaataactttgatgaaaatcgaaaaattggaaaagtaatgggcgatatagtctacaaaggctatgtcaaatataatggtgaaaatg |
4927903 |
T |
|
| Q |
101 |
attatccaatagcattgttgcggataactaatacattcatgaaagaatcgttcaagaatgaaattgaacttcactgccagctttctcacccaaatttgat |
200 |
Q |
| |
|
|||||||||||||||||||||||||||| || ||| | | | || |||||||||||||| |||| | ||||||||||| ||||||||||||||| |
|
|
| T |
4927904 |
attatccaatagcattgttgcggataacagatgtatttaggggacaaggtttcaagaatgaaatagaacacctctgccagctttgtcacccaaatttgat |
4928003 |
T |
|
| Q |
201 |
atctttgataggattttgtgaccnnnnnnntgagaaaattctcgtgtataaaaaagatgaaatggtcaatggctctctccgtgatcacttatgttcaagg |
300 |
Q |
| |
|
|||||| |||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||| |||| ||| |
|
|
| T |
4928004 |
atcttttataggattttgtgaccaaaaaaataagaaaattctcgtgtataaaaaagatgaaatggtcaatggcactctccaagatcacttaggttcgagg |
4928103 |
T |
|
| Q |
301 |
gacacggtttcactctcttggnnnnnnnggcttgaaatatgcattggagctgcaaaaggactacactaccttcacactggagcaaagcgcccgattttcc |
400 |
Q |
| |
|
|| | || |||||||| ||| |||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| |||||||||| |
|
|
| T |
4928104 |
gatatggaatcactctcgtggaagaaaaggcttgaaatatgcattggagctgcaaaaggactacactatcttcacactggaacaaagcgtccgattttcc |
4928203 |
T |
|
| Q |
401 |
accgtgacgtaaagccttgcagcattcttttggataacaatatggcaccaaaactctcgcaatttggattatccttacaagggaagctttcaaaatcgga |
500 |
Q |
| |
|
|||||||||||| || | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
4928204 |
accgtgacgtaattccacagaacattcttttggataacaatatggcaccaaaactctcgcaatttggattatccttacaagggaagctttctaaatcgga |
4928303 |
T |
|
| Q |
501 |
gtcaaaaccaattgaagtc |
519 |
Q |
| |
|
||||| |||||||| |||| |
|
|
| T |
4928304 |
gtcaataccaattgtagtc |
4928322 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 105; E-Value: 5e-52
Query Start/End: Original strand, 67 - 523
Target Start/End: Complemental strand, 4908340 - 4907890
Alignment:
| Q |
67 |
tacaaaggttatgtcaaatataatggtgaaaatgattatccaatagcattgttgcggataactaatacattca-tgaaagaatcgttcaagaatgaaatt |
165 |
Q |
| |
|
|||||||||||| ||||| |||||||||||| |||||||||||||||| || ||||| | ||| ||| | |||| | | ||||||||| |||||| |
|
|
| T |
4908340 |
tacaaaggttatctcaaacataatggtgaaactgattatccaatagcagtgaaacggatgatacatatatttaatgaatggaa-gttcaagaaggaaatt |
4908242 |
T |
|
| Q |
166 |
gaacttcactgccagctttctcacccaaatttgatatctttgataggattttgtgaccnnnnnnntgagaaaattctcgtgtataaaaaagatgaaatgg |
265 |
Q |
| |
|
||||| ||||||||||| |||||||||||||| ||||| |||||||| ||||||| |||||||||||| |||||| || | ||| |
|
|
| T |
4908241 |
gaactcaactgccagcttcatcacccaaatttgacgtcttttataggattctgtgaccacaagtatgagaaaattcttgtgtat------gagtacatgt |
4908148 |
T |
|
| Q |
266 |
tcaatggctctctccgtgatcacttatgttcaagggacacggtttcactctcttggnnnnnnnggcttgaaatatgcattggagctgcaaaaggactaca |
365 |
Q |
| |
|
||||||||||||| ||||||| || || ||||| | || ||| | || ||| |||| |||||||||||||||||||||||||||||||| |
|
|
| T |
4908147 |
ccaatggctctctctatgatcacctacttttgagggatatggaatcattgtcatggaagaaaaggctagaaatatgcattggagctgcaaaaggactaca |
4908048 |
T |
|
| Q |
366 |
ctaccttcacactggagcaaagcgcccgattttccaccgtgacgtaaagccttgcagcattcttttggataacaatatggcaccaaaactctcgcaattt |
465 |
Q |
| |
|
||||||||||||||||||||||||| | ||||| ||| ||||| |||||||| | ||||||||| ||||| ||||||| ||||||||||||||| || |
|
|
| T |
4908047 |
ctaccttcacactggagcaaagcgcgcaatttttcactgtgacataaagcctcaaaccattcttttagataagaatatggtaccaaaactctcgcatctt |
4907948 |
T |
|
| Q |
466 |
ggattatccttacaagggaagctttcaaaatcggagtcaaaaccaattgaagtcaaca |
523 |
Q |
| |
|
||||| |||||||||||||||||| | || || || |||||||| |||||||||||| |
|
|
| T |
4907947 |
ggattttccttacaagggaagcttcctaactctaagccaaaaccagttgaagtcaaca |
4907890 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 71; E-Value: 9e-32
Query Start/End: Original strand, 329 - 491
Target Start/End: Original strand, 5822169 - 5822331
Alignment:
| Q |
329 |
ggcttgaaatatgcattggagctgcaaaaggactacactaccttcacactggagcaaagcgcccgattttccaccgtgacgtaaagccttgcagcattct |
428 |
Q |
| |
|
|||||||||||||||| |||||||| || |||||||||||||||||||||||| |||||||| || |||| || ||||| |||| ||| | |||||| |
|
|
| T |
5822169 |
ggcttgaaatatgcatcggagctgctaagggactacactaccttcacactggaacaaagcgcacggtttttcattgtgacataaaacctcaaaccattct |
5822268 |
T |
|
| Q |
429 |
tttggataacaatatggcaccaaaactctcgcaatttggattatccttacaagggaagctttc |
491 |
Q |
| |
|
||| ||||| ||||||| |||||||||||| || ||||||| || ||||||||||||||||| |
|
|
| T |
5822269 |
tttagataagaatatggtaccaaaactctcacatcttggattttctttacaagggaagctttc |
5822331 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 1 - 497
Target Start/End: Complemental strand, 4904482 - 4903992
Alignment:
| Q |
1 |
cttaagaaagctaccaataactttgatgaaaatcgaaaaattggagaaatatgcggcaatatagtgtacaaaggttatgtcaaatataatggtgaaaatg |
100 |
Q |
| |
|
||||||||| | | ||||||||||||||||| ||||||| ||||| || | || ||||||||||||||||||| ||||| ||||||||||||||| |
|
|
| T |
4904482 |
cttaagaaatcaagcaataactttgatgaaactcgaaaacttggacaatcactatacagtatagtgtacaaaggttatctcaaacataatggtgaaaatg |
4904383 |
T |
|
| Q |
101 |
attatccaatagcattgttgcggataactaatacattcat-gaaagaatcgttcaagaatgaaattgaacttcactgccagctttctcacccaaatttga |
199 |
Q |
| |
|
| |||||| |||||||| | |||| || || ||| || | || ||||||||| | ||||||||| ||| |||| ||| |||||| ||||||| |
|
|
| T |
4904382 |
agtatccagtagcattggagaggatgacacttagattgggcgattggat-gttcaagaaggtaattgaactccacagccaacttcatcaccctaatttga |
4904284 |
T |
|
| Q |
200 |
tatctttgataggattttgtgaccnnnnnnntgagaaaattctcgtgtataaaaaagatgaaatggtcaatggctctctccgtgatcacttatgttcaag |
299 |
Q |
| |
|
||||||| |||||||| || ||| |||||||||| | |||||| || | ||| ||||||| |||||| |||||||||||||||||| |
|
|
| T |
4904283 |
tatctttaataggattctgcgacgagaaagatgagaaaattatagtgtat------gagtacatgttcaatggttctctctatgatcacttatgttcaag |
4904190 |
T |
|
| Q |
300 |
ggacacggtttcactctcttggnnnnnnnggcttgaaatatgcattggagctgcaaaaggactacactaccttcacactggagcaaagcgcccgattttc |
399 |
Q |
| |
|
||| | |||||||| ||| ||||||||||||||||||||| ||||| |||||||||||| |||||||| |||||||||||| | ||||| |
|
|
| T |
4904189 |
ggatctagaatcactctcatggaagaaaaggcttgaaatatgcattggagttgcaagaggactacactatcttcacaccggagcaaagcgcgcaattttt |
4904090 |
T |
|
| Q |
400 |
caccgtgacgtaaagccttgcagcattcttttggataacaatatggcaccaaaactctcgcaatttggattatccttacaagggaagctttcaaaatc |
497 |
Q |
| |
|
||| |||| |||||||| | |||||||| |||||||| |||| |||||||||| | ||| ||||| | ||||| |||| ||||| ||| ||||| |
|
|
| T |
4904089 |
cactgtgatataaagcctcaaacaattcttttagataacaaaatggtaccaaaactcgcacaacttggaatttccttgcaagagaagcgttctaaatc |
4903992 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 60 - 112
Target Start/End: Original strand, 5821906 - 5821958
Alignment:
| Q |
60 |
tatagtgtacaaaggttatgtcaaatataatggtgaaaatgattatccaatag |
112 |
Q |
| |
|
||||||||||||||||||| ||||| ||| |||||||| ||| |||||||||| |
|
|
| T |
5821906 |
tatagtgtacaaaggttatctcaaacatagtggtgaaactgagtatccaatag |
5821958 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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