View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3587_low_5 (Length: 501)
Name: NF3587_low_5
Description: NF3587
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3587_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 391; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 391; E-Value: 0
Query Start/End: Original strand, 1 - 395
Target Start/End: Complemental strand, 46816970 - 46816576
Alignment:
| Q |
1 |
gtaatgccaaatttcaatttcaaccatttttgtacacaaattcttacataaacccttctaaaatgcctaacaaaaatattttctaacaaatgtgaattcc |
100 |
Q |
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| T |
46816970 |
gtaatgccaaatttcaatttcaatcatttttgtacacaaattcttacataaacccttctaaaatgcctaacaaaaatattttctaacaaatgtgaattcc |
46816871 |
T |
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| Q |
101 |
atttcttacttagaaatcgaatcatgctaaataagaaatgaaactagcatgatctatcatctagtaacattgtaggtttaattcctctaaactatttttc |
200 |
Q |
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| T |
46816870 |
atttcttacttagaaatcgaatcatgctaaataagaaatgaaactagcatgatctatcatctagtaacattgtaggtttaattcctctaaactatttttc |
46816771 |
T |
|
| Q |
201 |
gtttgaattaatctttataatgattttgatgtatattcacaggtccagtggctctaggaccatctcattcacctgcatcttctccctcaggatttattcc |
300 |
Q |
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| T |
46816770 |
gtttgaattaatctttataatgattttgatgtatattcacaggtccagtggctctaggaccatctcattcacctgcatcttctccctcaggatttattcc |
46816671 |
T |
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| Q |
301 |
aacccctagtcctcaaggttattagcattacactattctattataatacaagcttatacatgtttaaacttttcatactgctaagagcttcttaa |
395 |
Q |
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| T |
46816670 |
aacccctagtcctcaaggttattagcattacactattctattataatacaagcttatacatgtttaaacttttcatactgctaagagcttcttaa |
46816576 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 427 - 501
Target Start/End: Complemental strand, 46816571 - 46816499
Alignment:
| Q |
427 |
ttactaacatccaactcttgtacatttttctttgagcagcatcttctgacctaccagcttcaccaacttcatctc |
501 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46816571 |
ttactaacatccaactctt--acatttttctttgagcagcatcttctgacctaccagcttcaccaacttcatctc |
46816499 |
T |
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