View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3587_low_6 (Length: 384)
Name: NF3587_low_6
Description: NF3587
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3587_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 270; Significance: 1e-151; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 95 - 376
Target Start/End: Complemental strand, 48960666 - 48960385
Alignment:
| Q |
95 |
catgcaacaaataaatttgcaaatcatatatttaatatacaacttactcattcatgattactgctaaacgttatgaacatgttagagtatcatgcatgag |
194 |
Q |
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| T |
48960666 |
catgcaacaaataaatttgcaaatcatatatttaatatacaacttactcattcattattactgctaaacgttatgaacatgttagagtatcatgcatgag |
48960567 |
T |
|
| Q |
195 |
atgaaagattatctgcacaaaatgtttgaccttcacacttatatgcatgcaagaaggaaagaaatagaaactgcaattctcgaattgttttgaaagtggc |
294 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
48960566 |
atgaaagattatccgcacaaaatgtttgaccttcacacttatatgcatgcaagaaggaaagaaatagaaactgcaatcctcgaattgttttgaaagtggc |
48960467 |
T |
|
| Q |
295 |
gagcgacgtgtaccagtatcagagaacaaaatgtttgcattagagacatgtgaaaacatagttagcagacgaagttcatctc |
376 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48960466 |
gagcgacgtgtaccagtatcagagaacaaaatgtttgcattagagacatgtgaaaacatagttagcagacgaagttcatctc |
48960385 |
T |
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