View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3587_low_9 (Length: 300)
Name: NF3587_low_9
Description: NF3587
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3587_low_9 |
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Alignment Details
Target: chr8 (Bit Score: 148; Significance: 4e-78; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 32 - 203
Target Start/End: Complemental strand, 27848760 - 27848589
Alignment:
| Q |
32 |
ttccttcaccaggtctaacaggaacatacccaacgcctcctttgcctcctccaccaggaacatcaccacctcctttgcccggtccaccaggaacataccc |
131 |
Q |
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| T |
27848760 |
ttccttcaccaggtccaacaggaacatacccaacgcctcctttccctccttcaccaggaacatcaccacctccttcgcccggtccaccaggaacataccc |
27848661 |
T |
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| Q |
132 |
accacctacatcgcctcctccaccaggaatatcaccacctccttcacccggtccaccaggaacatatccacc |
203 |
Q |
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| T |
27848660 |
accacctacatcacctcctccaccaggaatatcaccacctccttcacccggtccaccaggaacatgtccacc |
27848589 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 81 - 281
Target Start/End: Complemental strand, 27848609 - 27848412
Alignment:
| Q |
81 |
tccaccaggaacat---caccacctcctttgcccggtccaccaggaacatacccaccacctacatcgcctcctccaccaggaatat---caccacctcct |
174 |
Q |
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| T |
27848609 |
tccaccaggaacatgtccaccaactccttcacccggtccaccaggaacatatccacc---------gtctcctccaccaggaacatgtccaccaactcct |
27848519 |
T |
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| Q |
175 |
tcacccggtccaccaggaacatatccaccgtcttctccaccaggaacatgtccaccacttccttcacacgggtaaccagggacacattcaccgcctccta |
274 |
Q |
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| T |
27848518 |
tcacccggtccaccaggaacatatccaccgtcttctccaccaggaacatgtccaccacttccttcacacgggtaacctgggacacattcaccgcctccta |
27848419 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 76 - 203
Target Start/End: Complemental strand, 27848785 - 27848658
Alignment:
| Q |
76 |
cctcctccaccaggaacatcaccacctcctttgcccggtccaccaggaacatacccaccacctacatcgcctcctccaccaggaatatcaccacctcctt |
175 |
Q |
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| T |
27848785 |
cctcctccacctccaccatcaccacttccttcaccaggtccaacaggaacatacccaacgcctcctttccctccttcaccaggaacatcaccacctcctt |
27848686 |
T |
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| Q |
176 |
cacccggtccaccaggaacatatccacc |
203 |
Q |
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| T |
27848685 |
cgcccggtccaccaggaacatacccacc |
27848658 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 77 - 134
Target Start/End: Complemental strand, 27848550 - 27848490
Alignment:
| Q |
77 |
ctcctccaccaggaacat---caccacctcctttgcccggtccaccaggaacatacccacc |
134 |
Q |
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| T |
27848550 |
ctcctccaccaggaacatgtccaccaactccttcacccggtccaccaggaacatatccacc |
27848490 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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