View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3588_high_11 (Length: 239)
Name: NF3588_high_11
Description: NF3588
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3588_high_11 |
 | |
|
| [»] chr8 (1 HSPs) |
| |
|
Alignment Details
Target: chr8 (Bit Score: 221; Significance: 1e-122; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 15 - 239
Target Start/End: Complemental strand, 37602261 - 37602037
Alignment:
| Q |
15 |
atcatatgtacaactatgaattggcataaatttaaaagttttccaaagatttttggaattcctttcaaggagaaagtaaaaataaaatgatatgcaatag |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37602261 |
atcatatgtacaactatgaattggcataaatttaaaagttttccaaagatttttggaattcctttcaaggagaaagtaaaaataaaatgatatgcaatag |
37602162 |
T |
|
| Q |
115 |
taaaaaacagaatcatgttcataatgaagcagcaaaagacgctgtatatacagcactcattacatttatacttttataaagttggtatgaagtagcaaaa |
214 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37602161 |
taaaaaacagaatcatgttcatgatgaagcagcaaaagacgctgtatatacagcactcattacatttatacttttataaagttggtatgaagtagcaaaa |
37602062 |
T |
|
| Q |
215 |
gaaagcactagttcaataacaaaaa |
239 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
37602061 |
gaaagcactagttcaataacaaaaa |
37602037 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University