View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3588_low_13 (Length: 235)
Name: NF3588_low_13
Description: NF3588
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3588_low_13 |
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Alignment Details
Target: chr2 (Bit Score: 152; Significance: 1e-80; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 70 - 221
Target Start/End: Original strand, 1371209 - 1371360
Alignment:
| Q |
70 |
ctcacacttccaatggcttgaaaaagtgaagtattgaaagaagctgctgtaagaataggcataggaaaactagtagcacctggaaccaaacttgaaaaat |
169 |
Q |
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| T |
1371209 |
ctcacacttccaatggcttgaaaaagtgaagtattgaaagaagctgctgtaagaataggcataggaaaactagtagcacctggaaccaaacttgaaaaat |
1371308 |
T |
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| Q |
170 |
gtgtgccaggaccaatgttagagactccatgaagtgcttcagaccaccattc |
221 |
Q |
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| T |
1371309 |
gtgtgccaggaccaatgttagagactccatgaagtgcttcagaccaccattc |
1371360 |
T |
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Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 1371140 - 1371175
Alignment:
| Q |
1 |
ccatgttgtctgattaatactaattgcatcgctccc |
36 |
Q |
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| T |
1371140 |
ccatgttgtctgattaatactaattgcatcgctccc |
1371175 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 53; Significance: 1e-21; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 97 - 221
Target Start/End: Complemental strand, 37610043 - 37609919
Alignment:
| Q |
97 |
gaagtattgaaagaagctgctgtaagaataggcataggaaaactagtagcacctggaaccaaacttgaaaaatgtgtgccaggaccaatgttagagactc |
196 |
Q |
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| T |
37610043 |
gaagcattgaaagaagctgcaatgagaataggcataggaaaactggttgacccaggtataacattggaaaaatgagttcctggaccaatgttagagactc |
37609944 |
T |
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| Q |
197 |
catgaagtgcttcagaccaccattc |
221 |
Q |
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| T |
37609943 |
catgaagtgcttcagaccaccattc |
37609919 |
T |
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