View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3588_low_5 (Length: 297)
Name: NF3588_low_5
Description: NF3588
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3588_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 278
Target Start/End: Original strand, 20140828 - 20141099
Alignment:
| Q |
1 |
cttcttggcttctggtggaacatcaacaaccccagttctaatctcttcctcgttggtctgttcttgtccctgttgaagatgatgatgagcttcagaatct |
100 |
Q |
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| T |
20140828 |
cttcttggcttctggtggaacatcaacaaccccagttctaatctcttcctcgttggtctgttcttgtccctgttgaagatgatgatgagcttcagaatct |
20140927 |
T |
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| Q |
101 |
gcgtagagtgtatcatgataaagatcatcatagagtgaccaataagaagaacattcatttgtttgaggaggaagagatgatgaaggtgttgttgcnnnnn |
200 |
Q |
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| T |
20140928 |
gcgtagagtgtatcatgataaagatcatcatagagtgaccaataagaagaacattcatttgtttgaggaggaagagatgatgaaggtgttgttg------ |
20141021 |
T |
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| Q |
201 |
nnnnnnnnnnnnnnntaataggttgttggtggtgttgttcatctgggaaatcagcggtgttgaagagaataccagcat |
278 |
Q |
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| T |
20141022 |
atgatgatgatgatgtaataggttgttggtggtgttgttcatctgggaaatcagcggtgttgaagagaataccagcat |
20141099 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 278
Target Start/End: Original strand, 44318243 - 44318514
Alignment:
| Q |
1 |
cttcttggcttctggtggaacatcaacaaccccagttctaatctcttcctcgttggtctgttcttgtccctgttgaagatgatgatgagcttcagaatct |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44318243 |
cttcttggcttctggtggaacatcaacaaccccagttctaatctcttcctcgttggtctgttcttgtccctgttgaagatgatgatgagcttcagaatct |
44318342 |
T |
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| Q |
101 |
gcgtagagtgtatcatgataaagatcatcatagagtgaccaataagaagaacattcatttgtttgaggaggaagagatgatgaaggtgttgttgcnnnnn |
200 |
Q |
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| T |
44318343 |
gcgtagagtgtatcatgataaagatcatcatagagtgaccaataagaagaacattcatttgtttgaggaggaagagatgatgaaggtgttgttg------ |
44318436 |
T |
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| Q |
201 |
nnnnnnnnnnnnnnntaataggttgttggtggtgttgttcatctgggaaatcagcggtgttgaagagaataccagcat |
278 |
Q |
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| T |
44318437 |
atgatgatgatgatgtaataggttgttggtggtgttgttcatctgggaaatcagcggtgttgaagagaataccagcat |
44318514 |
T |
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