View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3588_low_6 (Length: 270)
Name: NF3588_low_6
Description: NF3588
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3588_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 241; Significance: 1e-133; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 1 - 253
Target Start/End: Original strand, 52432229 - 52432481
Alignment:
| Q |
1 |
attactactactctgctggatattatgaacatcgaaccaagcataccaggttcccacaagttaaaattttgcttaccaacctgatttgggggttgcctgt |
100 |
Q |
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| T |
52432229 |
attactactactctgctggatattatgaacatcgaaccaagcatgccaggttcccataagttaaaattttgcttaccaacctgatttgggggttgcctgt |
52432328 |
T |
|
| Q |
101 |
tgttattccaaatgcaccacaagagcatagcaacccaccctgctatgatacaatactcatgcttgcaatttgcaaatataacaattctgcataagtgcta |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
52432329 |
tgttattccaaatgcaccacaagagcatagcaacccaccctgctatgatacaatactcatgcttgcaatttgcaaatataaaaattctgcataagtgcta |
52432428 |
T |
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| Q |
201 |
aactgagccaatgtgttgcaaaacattggtcaaacatgcggccctccagtcac |
253 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52432429 |
aactgagccaatgtgttgcaaaacattggtcaaacatgcggccctccagtcac |
52432481 |
T |
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