View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3588_low_8 (Length: 260)
Name: NF3588_low_8
Description: NF3588
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3588_low_8 |
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| [»] chr8 (1 HSPs) |
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| [»] chr5 (1 HSPs) |
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| [»] chr4 (1 HSPs) |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 206; Significance: 1e-113; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 22 - 260
Target Start/End: Original strand, 28437125 - 28437355
Alignment:
| Q |
22 |
tgcatcaaatcatatcatcattcaattactcctatcttccctttccataaagaaaaaccatctttttctctttttctctctgaaaattcattcaatggtg |
121 |
Q |
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| T |
28437125 |
tgcatcaaatcatatcatcattcaactactcctatcttccctttccataaagaaaaaccatctt--------tttctctctgaaaattcattcaatggtg |
28437216 |
T |
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| Q |
122 |
gcaccaaatcacaaaaacacacaagatcatgaaaaccaacaaggttcttcatcagaaaccaagataacagatcaacaaaaagttgtaataaaatgtccaa |
221 |
Q |
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| T |
28437217 |
gcaccaaatcacaaaaacacacaagatcatgaaaaccaacaaggttcttcatcagaaaccaagataacagatcaacaaaaagttgtaataaaatgtccaa |
28437316 |
T |
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| Q |
222 |
gatgtgattctccaaacacaaaattctgttactacaaca |
260 |
Q |
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| T |
28437317 |
gatgtgattctccaaacacaaaattctgttactacaaca |
28437355 |
T |
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Target: chr1 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 215 - 258
Target Start/End: Original strand, 24878842 - 24878885
Alignment:
| Q |
215 |
tgtccaagatgtgattctccaaacacaaaattctgttactacaa |
258 |
Q |
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| T |
24878842 |
tgtccaagatgtggttcttcaaacacaaaattctgctactacaa |
24878885 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 215 - 260
Target Start/End: Original strand, 13481016 - 13481061
Alignment:
| Q |
215 |
tgtccaagatgtgattctccaaacacaaaattctgttactacaaca |
260 |
Q |
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| T |
13481016 |
tgtccaagatgtgactcacccaacacaaaattctgctactacaaca |
13481061 |
T |
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Target: chr4 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 215 - 260
Target Start/End: Original strand, 35721705 - 35721750
Alignment:
| Q |
215 |
tgtccaagatgtgattctccaaacacaaaattctgttactacaaca |
260 |
Q |
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| T |
35721705 |
tgtccaagatgtgattcaacaaacacaaagttttgttactacaaca |
35721750 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 212 - 260
Target Start/End: Complemental strand, 8132172 - 8132124
Alignment:
| Q |
212 |
aaatgtccaagatgtgattctccaaacacaaaattctgttactacaaca |
260 |
Q |
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| T |
8132172 |
aaatgtccaagatgtgaatcaacaaacacaaagttctgctactacaaca |
8132124 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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