View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3588_low_9 (Length: 256)

Name: NF3588_low_9
Description: NF3588
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3588_low_9
NF3588_low_9
[»] chr2 (9 HSPs)
chr2 (5-123)||(41649963-41650081)
chr2 (24-123)||(43228097-43228199)
chr2 (188-239)||(41649847-41649898)
chr2 (5-122)||(43213542-43213659)
chr2 (24-123)||(43206587-43206683)
chr2 (188-239)||(43228260-43228311)
chr2 (5-45)||(41654581-41654621)
chr2 (5-45)||(43224277-43224317)
chr2 (91-123)||(43224351-43224383)


Alignment Details
Target: chr2 (Bit Score: 115; Significance: 2e-58; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 5 - 123
Target Start/End: Complemental strand, 41650081 - 41649963
Alignment:
Q  5 ccttatatcaaccatgaaatcaaaaacttgaggttccttggataaatttagaaagtttgggattgataagtggtcatttgaagtggtggaggaagaatct 104  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  41650081 ccttatatcaaccatgaaatcaaaaacttgaggttccttggataaatttagaaagtttgggattgataagtggtcatttgaagtggtggaggaggaatct 41649982  T
Q  105 gagaagattggtgttgcag 123  Q
    |||||||||||||||||||    
T  41649981 gagaagattggtgttgcag 41649963  T

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Target: chr2; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 24 - 123
Target Start/End: Original strand, 43228097 - 43228199
Alignment:
Q  24 tcaaaaacttgaggttccttggataaatttagaaagtttgggattgataagtggtcatttgaagtggt---ggaggaagaatctgagaagattggtgttg 120  Q
    |||||||||| ||| || || | ||||| |||||||||||||||||||||||||||||||||||||||   |||||| |||||||||||||||| |||||    
T  43228097 tcaaaaactttaggctctttagctaaatctagaaagtttgggattgataagtggtcatttgaagtggtggaggaggaggaatctgagaagattgatgttg 43228196  T
Q  121 cag 123  Q
    |||    
T  43228197 cag 43228199  T

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Target: chr2; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 188 - 239
Target Start/End: Complemental strand, 41649898 - 41649847
Alignment:
Q  188 catgcattcaaagtgttaaggtgggaaatggaaaagaaagaaaagaagttaa 239  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  41649898 catgcattcaaagtgttaaggtgggaaatggaaaagaaaaaaaagaagttaa 41649847  T

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Target: chr2; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 5 - 122
Target Start/End: Original strand, 43213542 - 43213659
Alignment:
Q  5 ccttatatcaaccatgaaatcaaaaacttgaggttccttggataaatttagaaagtttgggattgataagtggtcatttgaagtggtggaggaagaatct 104  Q
    |||||||||||||||  |||||||||||||||| || |||| ||| |  ||||  ||||| |||| ||||||||| |||||| | |||||||| ||||||    
T  43213542 ccttatatcaaccatccaatcaaaaacttgaggctctttggctaattccagaagctttggaattgctaagtggtcttttgaattagtggaggaggaatct 43213641  T
Q  105 gagaagattggtgttgca 122  Q
    ||||| || |||||||||    
T  43213642 gagaaaataggtgttgca 43213659  T

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Target: chr2; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 24 - 123
Target Start/End: Original strand, 43206587 - 43206683
Alignment:
Q  24 tcaaaaacttgaggttccttggataaatttagaaagtttgggattgataagtggtcatttgaagtggtggaggaagaatctgagaagattggtgttgcag 123  Q
    |||||||||| ||| || || | ||||| ||||||||||||||||||||||||||||||||||||||  || ||||  |||||||||| |||||||||||    
T  43206587 tcaaaaactttaggctctttagctaaatctagaaagtttgggattgataagtggtcatttgaagtggaaga-gaag--tctgagaagactggtgttgcag 43206683  T

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Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 188 - 239
Target Start/End: Original strand, 43228260 - 43228311
Alignment:
Q  188 catgcattcaaagtgttaaggtgggaaatggaaaagaaagaaaagaagttaa 239  Q
    ||||||||||||||||| |  || ||||||||||||||||||||||||||||    
T  43228260 catgcattcaaagtgttgaactgagaaatggaaaagaaagaaaagaagttaa 43228311  T

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Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 5 - 45
Target Start/End: Complemental strand, 41654621 - 41654581
Alignment:
Q  5 ccttatatcaaccatgaaatcaaaaacttgaggttccttgg 45  Q
    |||||||||||||||  ||||||||||||||||||||||||    
T  41654621 ccttatatcaaccatccaatcaaaaacttgaggttccttgg 41654581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 5 - 45
Target Start/End: Original strand, 43224277 - 43224317
Alignment:
Q  5 ccttatatcaaccatgaaatcaaaaacttgaggttccttgg 45  Q
    |||||||||||||||  ||||||||||||||||||||||||    
T  43224277 ccttatatcaaccatccaatcaaaaacttgaggttccttgg 43224317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 91 - 123
Target Start/End: Original strand, 43224351 - 43224383
Alignment:
Q  91 tggaggaagaatctgagaagattggtgttgcag 123  Q
    |||||||||||||||||||||||||||| ||||    
T  43224351 tggaggaagaatctgagaagattggtgtagcag 43224383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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