View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3589_high_12 (Length: 260)
Name: NF3589_high_12
Description: NF3589
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3589_high_12 |
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Alignment Details
Target: chr2 (Bit Score: 204; Significance: 1e-111; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 14 - 241
Target Start/End: Complemental strand, 4985628 - 4985401
Alignment:
| Q |
14 |
aatataaaatgaaaatgtaacttcaaaaatttctatatctatactgagttgttcatctatccttgtctcaattccctccaatctaacaatcccattttgc |
113 |
Q |
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| T |
4985628 |
aatataaaatgaagatgtaacttcaaaaatttctatatctatactgagttgttcaactatccttgtctcaattccctccaatctaacaatcccattttgc |
4985529 |
T |
|
| Q |
114 |
ttcataaccttaaatctaccatctatttgtgctatttcttcaagttttgacacaacagttgaaggcggtctatttgtagaaaatcttgcatgatgtcttt |
213 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||| |||||||||||||||||||||||||||| |
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| T |
4985528 |
ttcataaccttaaatctaccatctatttgtgctatttcttcaagttttgacacaacatttgaaggtggtctttttgtagaaaatcttgcatgatgtcttt |
4985429 |
T |
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| Q |
214 |
tactcatacctttctcaagcaaacgaga |
241 |
Q |
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|||||||||||||||||| ||||||||| |
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| T |
4985428 |
tactcatacctttctcaaacaaacgaga |
4985401 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 14 - 237
Target Start/End: Complemental strand, 4983239 - 4983016
Alignment:
| Q |
14 |
aatataaaatgaaaatgtaacttcaaaaatttctatatctatactgagttgttcatctatccttgtctcaattccctccaatctaacaatcccattttgc |
113 |
Q |
| |
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||||||||||||| ||| |||||||||||||||| |||| || ||||||||||| || | |||||||| |||||||| ||||||||||||||||||| |
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| T |
4983239 |
aatataaaatgaagatgcaacttcaaaaatttctgtatcaatggtgagttgttcacttactcctgtctcaaatccctccactctaacaatcccattttgc |
4983140 |
T |
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| Q |
114 |
ttcataaccttaaatctaccatctatttgtgctatttcttcaagttttgacacaacagttgaaggcggtctatttgtagaaaatcttgcatgatgtcttt |
213 |
Q |
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||||| ||||||||||||||| ||| ||||||| | ||||||||||||||||||| |||||||| ||||||||||||| |||||||||||| |||| || |
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| T |
4983139 |
ttcatcaccttaaatctaccaactaattgtgctgtctcttcaagttttgacacaattgttgaaggtggtctatttgtagcaaatcttgcatgttgtcctt |
4983040 |
T |
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| Q |
214 |
tactcatacctttctcaagcaaac |
237 |
Q |
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|||| || |||| |||| ||||| |
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| T |
4983039 |
cactcgtatctttttcaaacaaac |
4983016 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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